Tabs011078.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tuta absoluta
Gene Symbol
-
Assembly
GCA_029230345.1
Location
CM055289.1:7975027-7992269[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 24 0.00039 0.038 15.5 1.7 1 23 428 450 428 450 0.96
2 24 0.004 0.39 12.3 0.6 1 20 456 475 456 478 0.94
3 24 2.8e-05 0.0027 19.1 5.6 1 23 497 519 497 519 0.98
4 24 0.00025 0.024 16.1 4.7 1 23 525 547 525 547 0.99
5 24 4.9e-05 0.0048 18.3 5.3 1 23 553 575 553 575 0.97
6 24 1.5e-05 0.0015 20.0 7.3 1 23 581 603 581 603 0.97
7 24 1.3e-06 0.00013 23.3 3.5 1 23 609 631 609 631 0.97
8 24 0.00013 0.013 17.0 6.7 1 23 637 659 637 659 0.97
9 24 0.00013 0.013 17.0 6.5 1 23 665 687 665 687 0.97
10 24 6.5e-07 6.3e-05 24.3 1.9 1 23 693 715 693 715 0.98
11 24 1.2e-05 0.0012 20.2 7.9 1 23 721 743 721 743 0.98
12 24 4.5e-05 0.0044 18.5 2.9 1 21 749 769 749 770 0.96
13 24 1.2e-05 0.0012 20.2 7.9 1 23 775 797 775 797 0.98
14 24 4.5e-05 0.0044 18.5 2.9 1 21 803 823 803 824 0.96
15 24 1.2e-05 0.0012 20.2 7.9 1 23 829 851 829 851 0.98
16 24 5.7e-05 0.0055 18.1 6.6 1 23 857 879 857 879 0.98
17 24 5.9e-06 0.00058 21.2 5.2 1 23 885 907 885 907 0.98
18 24 1.1e-05 0.0011 20.4 6.4 1 23 913 935 913 935 0.97
19 24 0.00034 0.033 15.7 6.3 1 23 941 963 941 963 0.97
20 24 4e-06 0.00039 21.7 6.0 1 23 969 991 969 991 0.98
21 24 7.5e-05 0.0073 17.8 7.8 1 23 997 1019 997 1019 0.97
22 24 1.4e-06 0.00014 23.2 4.2 1 23 1025 1047 1025 1047 0.96
23 24 0.00072 0.07 14.7 0.3 1 23 1054 1076 1054 1076 0.96
24 24 0.034 3.3 9.4 5.4 1 23 1086 1108 1086 1108 0.99

Sequence Information

Coding Sequence
ATGAATCCGGAGCACCACAACATGAACACGGGTGGTGGCCAACCTCCTGGAAATTCCGAGTCGCAGAACCAGAGGGTTCAGGCGGCTCAGCAGCAGCAACAGCAGGCCAGTTTGACCCCTACGACTTCTGCTACGGATTTACGAGTGAATACGGCGGCGGTGAACGTCGCTTTGTCTAGTGTCGCCAAGTACTGGGTGTTCACGAATTTATTCCCCGGACCGTTGCCTCAAGTGTCCGTTTATGGACTGCCCACAGGAACAAGGATTGAAAATGGAAAACCTGTAcaaGACCTGGGACAGGCACACGCCAGCATTCTCAATGGTGATCCAAACATTATACTTGGCCACCACGGTGGTCAGCAAACTGTTGCAGTTTCTGCATCTGGCCAACAGATTCCAGTTTCTCAAATCATTGCACAGGCTCAGGCTGGACAAACACATGAAGCTCTTGTGGCGCACAACCAGCAGCAAGATATGAGCTCCCAGCAGCCATCAAACTCGGGTACTCAGGTCACCGTAAGCGGGAACCAACAAGGACACCAGCAGGTACCCAATAACCGGGTCGAGTTTGTACAACACCATAACATTGATATGGTAAATCATGTGGGTCACCACTCACAACAGCACATAATGCAGCAACAGCTTATGGCCACCACTCGCCCTGAACACAGTAATCAACAGATTCAACTGACAGTGAGCGAAGATGGCATAGTGACGGTGGTGGAGCCGGGCGGCGGCAAGCTGGTGGACAAGGAAGAGCTGCACGAGAGCATCAAGATGCCCGGCACCGACCACACGCTCACCGTGCACCAGCTGCAGCAGATTGTTGGACAACAGGTGCTTGACAGCGTGGTGCGCATCGAGCAGGCCACGGGCGAGCCAGCCAACATCTTAGTGACGCACAACCCCGACGGCACCACCTCCATAGAAGCCAGCGCCGGCGACAACCTCATTGTCAAAGGCGAGAAAGAAGCTGGCAAGATGGAAACCGCACAGTTCGCTATACCTGCCGAAATCAAAGATATCAAAGGGATTGATTTGAAGAGTGTAGGCGCAATGGGCATGGAAGGCGCCGTGGTGAAGATCTCCGCGGGCGCGGGCTCGGAGCACGACCTGCACGCGATGTACAAGGTCAACGTGGAGGATCTGTCGCAGCTGCTCGCCTACCACGAGGTCTTCGGGAAACTCAACGCGGAAGGTCAACCGCAAAACAAAGTAATAACAGAGGTAGAGGTTGAAGCCGGCACGAGCGCGGCCATGGAGGAGTCGTCTCCCGGCCACCACGCGTGCGACCTCTGCGGGAAGATATTCCAGTTCCGGTACCAGCTGATCGTCCACCGCCGCTACCACGGGGAGAGCAAGCCCTACACCTGCCAAGTGTGCGGCTCCGCCTTCGCCAACCCCGTCGAGCTCAGTCGACACGGGAAGTGCCATATGGCTGGGGACCCGGCGGAGCGGCACGCCAAGCGGATGACCCAGGACAAGCCGTACGCCTGCACCACTTGCCACAAGACGTTCTCCCGCAAGGAGCACCTCGACAACCACGTGCGCAGCCACACCGGCGAGACACCGTAcagATGCCAGTTCTGCGCGAAGACGTTCACGCGCAAGGAGCACATGGTGAACCACGTGCGCAAGCACACCGGCGAGACGCCGCATCGCTGCGACATCTGCAAGAAGAGCTTCACGCGCAAGGAGCACTTCATGAACCACGTCATGTGGCACACAGGTGAAACGCCGCACCATTGTCAAATATGTGGCAAGAAGTATACTAGGAAGGAGCATTTAGTGAACCATATGAGGTCGCATACGAACGATACGCCCTTCCGATGTACGCTCTGCGGCAAGTCCTTCACGAGAAAGGAACACTTCACCAACCACATTCTGTGGCACACTGGCGAGACCCCCCACCGCTGCGACTTCTGTTCTAAAACATTTACTCGCAAGGAGCACTTACTGAACCACGTGCGCCAACACACAGGCGAGTCGCCGCATCGCTGCAACTTCTGCTCCAAGTCCTTCACGCGGCGCGAGCACCTGGTCAACCACGTGCGCCAGCACACCGGCGAGACGCCCTTCCAGTGCGGCTACTGCCCCAAGGCCTTCACCAGGAAGGATCACCTCGTGAACCACGTCCGGCAGCACACGGGCGAATCGCCGCACAAGTGCACCTACTGCACCAAGTCGTTCACTCGCAAGGAGCACCTCACCAACCACGTGCGCCAGCACACCGGCGAGTCGCCGCACCGCTGCTCCTTCTGCGCCAAGAGCTTCACCAGGAAGGAGCACCTCACCAACCACATCAGGTGGGACATTACTCAGCACAAGTGCACCTACTGCACCAAGTCGTTCACTCGCAAGGAGCACCTCACCAACCACGTGCGCCAGCACACCGGCGAGTCGCCGCACCGCTGCTCCTTCTGCGCCAAGAGCTTCACCAGGAAGGAGCACCTCACCAACCACATCAGGTGGGACATTACTCAGCACAAGTGCACCTACTGCACCAAGTCGTTCACTCGCAAGGAGCACCTCACCAACCACGTGCGCCAGCACACCGGCGAGTCGCCGCACCGCTGCTCCTTCTGCGCCAAGAGCTTCACCAGGAAGGAGCACCTCACCAACCACATCAGACAGCACACGGGTGAGACTCCGCACAAGTGCACGTACTGCCCGCGCGCCTTCTCGCGCAAAGAGCACCTCAACAACCACGTGCGCCAGCACACCGGCGACGCGCCGCACACCTGCTCCTACTGCAACAAGACCTTCACCAGGAAGGAGCATCTCGTCAACCACGTCAGACAACACACCGGCGAGACACCGTTCAAGTGCACGTTTTGCGCGAAGTCGTTCTCGCGCAAGGAGCACCTCACCAACCACGTGCACCTGCACACCGGCGAGACGCCGCACAAGTGCCCCTTCTGCACCAAGACCTTCAGCCGCAAGGAGCATCTCACCAACCACGTCAGGATACACACGGGCGAGTCCCCTCACCGATGCGAGTTCTGCCAGAAGACGTTCACGCGCAAGGAGCACCTCACCAACCACCTGAAGCAGCACACCGGCGACACGCCGCACGCCTGCAAGATCTGCCAGAAACCATTCACCAGGAAGGAGCACCTCATCACGCACATGAGGTCGCACAGTTGCGGCGAGCGGCCCTACAGCTGCGGCGAGTGCGGCAAGTCGTTCCCTCTGAAGGGCAACCTGCTGTTCCACGAGCGCTCGCACCAGAAGGGCCAGAACGGCCCAAGGCCCTTCCGCTGCGATATCTGCTCCAAAGACTTCATGTGTAAAGGACACCTGGTGTCGCACCGCCGCACGCACGGCTCGGCGGGCGAGGGCGGCGACCAGCCCGCTGAGGCAGAGGAGTGCGGCGACGGCGTCAAGTGCGAGAAGGAGCCTGTGGACCGCAAGCCGGACATCAGAGTATCAACGGAAAACAGACCTACTGAACAAGTGACTGTCGCGACACATCAGAACACGACGCAAACCACCGTTATGCAAATAACGAGTCAGCAAGTAGTGCGCGCAGGAGTGGGCGTGCCGGTCAGCGCGGGGGGGGTGAGCGGCGCGGGCGGGGCGGGCGCCGTGGTGGCCACGTTCAGCCACACCCCCGCCCCGCACCCCGCGCACCACACCGGCCCCGCGCTCGCCCACCACCCCGTCACCGTCAACTACTAG
Protein Sequence
MNPEHHNMNTGGGQPPGNSESQNQRVQAAQQQQQQASLTPTTSATDLRVNTAAVNVALSSVAKYWVFTNLFPGPLPQVSVYGLPTGTRIENGKPVQDLGQAHASILNGDPNIILGHHGGQQTVAVSASGQQIPVSQIIAQAQAGQTHEALVAHNQQQDMSSQQPSNSGTQVTVSGNQQGHQQVPNNRVEFVQHHNIDMVNHVGHHSQQHIMQQQLMATTRPEHSNQQIQLTVSEDGIVTVVEPGGGKLVDKEELHESIKMPGTDHTLTVHQLQQIVGQQVLDSVVRIEQATGEPANILVTHNPDGTTSIEASAGDNLIVKGEKEAGKMETAQFAIPAEIKDIKGIDLKSVGAMGMEGAVVKISAGAGSEHDLHAMYKVNVEDLSQLLAYHEVFGKLNAEGQPQNKVITEVEVEAGTSAAMEESSPGHHACDLCGKIFQFRYQLIVHRRYHGESKPYTCQVCGSAFANPVELSRHGKCHMAGDPAERHAKRMTQDKPYACTTCHKTFSRKEHLDNHVRSHTGETPYRCQFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQICGKKYTRKEHLVNHMRSHTNDTPFRCTLCGKSFTRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCTYCTKSFTRKEHLTNHVRQHTGESPHRCSFCAKSFTRKEHLTNHIRWDITQHKCTYCTKSFTRKEHLTNHVRQHTGESPHRCSFCAKSFTRKEHLTNHIRWDITQHKCTYCTKSFTRKEHLTNHVRQHTGESPHRCSFCAKSFTRKEHLTNHIRQHTGETPHKCTYCPRAFSRKEHLNNHVRQHTGDAPHTCSYCNKTFTRKEHLVNHVRQHTGETPFKCTFCAKSFSRKEHLTNHVHLHTGETPHKCPFCTKTFSRKEHLTNHVRIHTGESPHRCEFCQKTFTRKEHLTNHLKQHTGDTPHACKICQKPFTRKEHLITHMRSHSCGERPYSCGECGKSFPLKGNLLFHERSHQKGQNGPRPFRCDICSKDFMCKGHLVSHRRTHGSAGEGGDQPAEAEECGDGVKCEKEPVDRKPDIRVSTENRPTEQVTVATHQNTTQTTVMQITSQQVVRAGVGVPVSAGGVSGAGGAGAVVATFSHTPAPHPAHHTGPALAHHPVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-