Tabs001748.1
Basic Information
- Insect
- Tuta absoluta
- Gene Symbol
- -
- Assembly
- GCA_029230345.1
- Location
- CM055282.1:30095610-30096884[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.7e-09 1.5e-06 28.9 0.0 1 37 18 55 18 60 0.90 2 2 0.92 8.1e+02 0.9 0.0 14 24 72 81 67 99 0.80
Sequence Information
- Coding Sequence
- ATGGTGCGGACTTACAAAAAGACGCCGGGTACCCGCAATTATAAGAACTACTCCGAGGAAACATTAGAAGAGGCAATagaaaaaatatcaaacaatGAGTTATCTATTAACGCGGCGTCCTTGCAGTATAAAATTCCCTTTGGGACTTTGTACAATAAATATAAAGGAATGCATGGCCGAACACCTGGTGCTCAACCAGTTTTTTCACATCAAGAAGAAATGTCCATTTTAAAAGCTGCAACAACATGTGGCGACTGGGGGTTCCCTCTAACCACGTTAGATTTGCGAATGTTTGCAAAGTCTTATTTGGATCGGCAAGGAAAAACAATAGCACGCTTTAAAAACAATGTGCCAGGTGTAGAGTGGGCGCTAAGCGTTCTTAAACGTCACAAGAATTCATTTGGCCAACGATTAGCGAGTAACATAAAGAGGTCCAGAGCAGCGGTAGGCAGAGAAtcactaaacaaatattttgataacCTGGAAGCTGAAATCGAGAATGTTCCAGCATCGAATATATTTAACTACGACGAGTCAAACTTGTCAGACGACCCAGGTAAAAAAAGATGCATTTACAAAAGAGGCGTAAAATACCCCGAAAAAGTCATGAACTTTTCTAAGAGTAGTACAACCGTCATGATATGTGGAAGCGCAGATGGAACACTTCTGCCCCCTTACGTAATTTATAAATCCCAGCATCTGTATGATACGTGGAGGGAGCGCGGAATAGTAGGTTCACCATGCTGTGCGGAACCATGTTGCAGCCGTGGTAGCAGATACAACAGGACAGCCAGTGGCTGGATCGATACGGTCACATTTCGTGACTGGTTCATGACTTGCTTTCTTCCCCACGCTAAAAGATTAGAAGGGAGGAAGGTTATAATTGGTGATAATTTATCATCACATCTTGACAGCGACGTTTTGAACGCCTGCACGGAGAACAATATTCGATTCATTTGTCTGGTTCCCAATTCAACCCATTTATGTCAACCTTTAGACGTAGGTTTTTTCAGGCCCATGAAAATTGCTTGGAGATTTGTCCTAGATGACTGGAAAAAAACCAATCTAAGGGCCACAACAGTACCAAAGGACAGCTTTCCGGCTTTGCTGAAGAAAGGAATAATTACGATGGATGAAAAGCCACCTAAAAACAAAGAAACAGAGCAAGAAACTTCTGCTGTCAAAAGAAATTTGATAAGTTCATTCAAAGCAACCGGAATATTTCACAAGAAGGCCCTGTACCTGATGTTGAGAATGTGGTCAGAGACCAGCTAA
- Protein Sequence
- MVRTYKKTPGTRNYKNYSEETLEEAIEKISNNELSINAASLQYKIPFGTLYNKYKGMHGRTPGAQPVFSHQEEMSILKAATTCGDWGFPLTTLDLRMFAKSYLDRQGKTIARFKNNVPGVEWALSVLKRHKNSFGQRLASNIKRSRAAVGRESLNKYFDNLEAEIENVPASNIFNYDESNLSDDPGKKRCIYKRGVKYPEKVMNFSKSSTTVMICGSADGTLLPPYVIYKSQHLYDTWRERGIVGSPCCAEPCCSRGSRYNRTASGWIDTVTFRDWFMTCFLPHAKRLEGRKVIIGDNLSSHLDSDVLNACTENNIRFICLVPNSTHLCQPLDVGFFRPMKIAWRFVLDDWKKTNLRATTVPKDSFPALLKKGIITMDEKPPKNKETEQETSAVKRNLISSFKATGIFHKKALYLMLRMWSETS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -