Tabs014903.1
Basic Information
- Insect
- Tuta absoluta
- Gene Symbol
- -
- Assembly
- GCA_029230345.1
- Location
- CM055292.1:4414050-4414493[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.3e-11 2.9e-08 34.3 0.1 1 37 25 61 25 69 0.89
Sequence Information
- Coding Sequence
- ATGCTAATTTTGTTTTACATAGCAACTTGTGTTTACGTTTATGCAGCAGACCATCGGCGGCGGGGTAGATGGACTGAGAAGAAGTTGGAGGCAGCTATGACAGCTGTGCGGCTTGGAGAGCTGTCCTCAAGCGCCGCGGCGAAACGCTATGGCATTCCTCGGAGAACTCTTCGCAATCATTTGGTCAGCGGATCAACAATCAAACGAATGGGGCGGCATGCCATACTGAACGAAACCCAGGAGAAGGAACTAATCAACAGAATTATGAAACTAACAAGTGATGGAACCCCAGTCACTTCGGAACTAATTCGACGAGAAGCGTTCCTTTACTGCGAAGAACGTAACCTAAGTCACAACTTCAACAAAAAGACTCGTCGAGCTGGCCCAGGCTGGCTTAGATCATTTTCGAAGAGGCATTCATACTTATTAAATTCTTCTAAATAG
- Protein Sequence
- MLILFYIATCVYVYAADHRRRGRWTEKKLEAAMTAVRLGELSSSAAAKRYGIPRRTLRNHLVSGSTIKRMGRHAILNETQEKELINRIMKLTSDGTPVTSELIRREAFLYCEERNLSHNFNKKTRRAGPGWLRSFSKRHSYLLNSSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01501050; iTF_01501053;
- 90% Identity
- iTF_01501053;
- 80% Identity
- -