Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 2 8e-07 0.0007 20.3 0.1 11 37 3 29 2 37 0.87

2 2 1.7e-09 1.5e-06 28.9 0.1 2 37 79 114 78 122 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	2	8e-07	0.0007	20.3	0.1	11	37	3	29	2	37	0.87
2	2	1.7e-09	1.5e-06	28.9	0.1	2	37	79	114	78	122	0.89

Coding Sequence: ATGACAGCTGTGCGGCTTGGAGAGCTGTCCTCATACGCCGCGGCGAAACGCTATGGCATTCCTCGGAGAACTCTGGGCAATCATTTGGTCAGCGGATCAACAATCAAACGAATGGGGCGGCATGCCATACTGAACGAAACCCAGGAGAAGGAACTATTCAACAGAATTATGAAACTAACAACATCTTGTGTTTACGTTTATGCAGCAGACCATCGGCGGCGGGGTAGATGGAGCGAGAAAAAGTTAGAGGCAGCTATGGCAGCTGTGCGGCTTGGAGAGCTGTCCTCATACGCCGCGGCGAAACGCTATGGCATTCCTCGGAGAACTCTGGGCAATCATTTGATCAGCGGATCAACAATCAAACGAATGGGGCGGCATGCCATACTGAACGAAACCCAAGAGGAGGAACTTATCAATCGAATTATGAAACTAACAAGTGATGGAACCCCAGTCACTTCGAAACTTATTCGACGAGAAGCTTTCTTTTATTGCGAAGAACGTAATCTAAGCCACAACTTCAGCAAAAAAACTTGTCATGCTGGCCGTAAATGGCTGATATCATTTTTAAAAAGACATCCTGACTTATTAAATtcttaa
Protein Sequence: MTAVRLGELSSYAAAKRYGIPRRTLGNHLVSGSTIKRMGRHAILNETQEKELFNRIMKLTTSCVYVYAADHRRRGRWSEKKLEAAMAAVRLGELSSYAAAKRYGIPRRTLGNHLISGSTIKRMGRHAILNETQEEELINRIMKLTSDGTPVTSKLIRREAFFYCEERNLSHNFSKKTCHAGRKWLISFLKRHPDLLNS

Sequence clustering based on sequence similarity using MMseqs2