Basic Information

Insect: Tupiocoris notatus
Gene Symbol: -
Assembly: GCA_037159825.1
Location: JASJUZ010000282.1:589609-599257[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 1.9e-07 2e-05 25.2 0.6 2 23 42 64 41 64 0.94

2 15 0.0051 0.53 11.2 1.2 5 22 152 169 149 169 0.94

3 15 0.078 8.2 7.5 0.6 3 21 201 220 200 221 0.92

4 15 0.58 60 4.7 0.6 5 21 242 258 240 259 0.93

5 15 0.023 2.4 9.1 1.1 5 21 341 357 338 358 0.91

6 15 0.0094 0.98 10.4 1.9 5 23 371 390 368 390 0.92

7 15 0.016 1.7 9.6 0.1 5 21 420 436 418 437 0.92

8 15 0.35 36 5.4 1.0 2 23 444 466 443 466 0.92

9 15 0.0041 0.43 11.5 0.8 6 21 491 506 490 507 0.96

10 15 6e-05 0.0063 17.3 1.7 1 21 520 540 520 541 0.93

11 15 0.13 13 6.8 5.8 1 23 547 570 547 570 0.93

12 15 3.4 3.6e+02 2.3 2.6 6 21 587 602 585 603 0.93

13 15 0.00053 0.055 14.3 0.4 1 23 609 632 609 632 0.94

14 15 0.13 13 6.8 5.4 5 21 639 655 637 656 0.93

15 15 2.4e-06 0.00025 21.7 0.4 2 23 663 685 662 685 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	1.9e-07	2e-05	25.2	0.6	2	23	42	64	41	64	0.94
2	15	0.0051	0.53	11.2	1.2	5	22	152	169	149	169	0.94
3	15	0.078	8.2	7.5	0.6	3	21	201	220	200	221	0.92
4	15	0.58	60	4.7	0.6	5	21	242	258	240	259	0.93
5	15	0.023	2.4	9.1	1.1	5	21	341	357	338	358	0.91
6	15	0.0094	0.98	10.4	1.9	5	23	371	390	368	390	0.92
7	15	0.016	1.7	9.6	0.1	5	21	420	436	418	437	0.92
8	15	0.35	36	5.4	1.0	2	23	444	466	443	466	0.92
9	15	0.0041	0.43	11.5	0.8	6	21	491	506	490	507	0.96
10	15	6e-05	0.0063	17.3	1.7	1	21	520	540	520	541	0.93
11	15	0.13	13	6.8	5.8	1	23	547	570	547	570	0.93
12	15	3.4	3.6e+02	2.3	2.6	6	21	587	602	585	603	0.93
13	15	0.00053	0.055	14.3	0.4	1	23	609	632	609	632	0.94
14	15	0.13	13	6.8	5.4	5	21	639	655	637	656	0.93
15	15	2.4e-06	0.00025	21.7	0.4	2	23	663	685	662	685	0.94

Sequence Information

Coding Sequence: atgtCGAAATTTGTTTCAGCCCTGTTGAAAACCTACAAGCCTTACAGATGCGAGTGCGGATCCGGCTTCGAACACATTTCGCGCCTGAGACATCACAAAAAACAGGAATGCCAACAGATTCTTCCGTGCACAGTTTGCGACAAAGTTTTCAGACACAAAGGCAGCCTCAAAAGGCATATGGCCATAGTTCACAACGCTTCACTCGCCATTGTGTCAATCCGTGCGATTAGGGCTACGAAGAAATGCAAAGACTGTCCCGACTGCAATGCTgTCCACGATTCGGCCAACGAAGTGGACAATGACAAGGAAATCTGTCCTACCGAATTTCCATCATTGACAATTACAGCAgTTCGCCGGGAAAATTGTGCTATCAAGGATGGTGGTGACGCAGTGAAAAAAACCGTCCCATTGAAACTGAGGAGAAGAACCGGTGGCCGTGGATTACACAGGTGCAAGTGCGGTAAATCGTATTACAGAGTCGACTCTCTCATACGTCATACCAGAACATCCTGCGTCCTGGTGTTTGGGCCCAAGCAGAACAAATCCAAGGAAATTCCGAAACCTCTGCTTGTAAAGGTTGGAAACGCTGGAAGGAATAATTGCTCGTGCGAGTGCGGCGTCAAGTTCGAAACTGCTGAAGAGTTCGAATCCCACAAGAAGGAGTGCAAGTTTAAAGCCGGCTTTGTTCCAGATCAGTCCAATGTTTCTTACGATTACGAGTGCTGGTGCGGGAAAGGTTTCAACTCCACGTGGTGTTATTACAAGCATCGAAGGGGATGCAAGATTTTCATTGATGCGCAATCAACCAACGTGACTCCTTCGGGGAGGATTTACCTCCGAGGTCGACCAGGGCCGTCTAATATCAAAATCGAGAGAAAATCGTCCGACGACGATTCAAGTTCAAACTCCAGTACCCTCCAGAATTCTTCTGCCAAGCTCGAAAGCTCCTTTTATGACACTTCTACTATAAAAGTGAAGCTAGAACCTGATGGAAAGACTGACCGAGTGCAATTCAAGTGCAAGTGCGGAAGGGCGTTTTCTACACTATCGGGGCTACATGCTCATTCCCGCTTCTGTCCCTTGCAAATCAGAAAGCTTGCATTCAAGTGCCATTGCGAGCGATCGTACTCTTCAAGGAGCGCTTTGGCCAAACATCAGGTCATCAAACACGGAAAAGTGTCCGGGCCGAAGAAAATTGTCAAGAATATTGTGAAAAAGACGCAACCAGCGGTACCGGTCGAAGAGCCGTCAACATGTGTTTGCGGAAAACAGTTTGCCAACAAAATGCTCCTTGCTAGGCACGTTCAGAACACGTGCGGCTTCGATCTCAGGTGCCCACTGTGCGGGAAGAATCATCCGATAAAACAGCTTCTGTACGGACACATGAAAAAACAGCATGGTATCATTCCGGAGACTGTTTACCCGTTCAGGCCCGAGGACCAAGTGGCCAATCGCCAACATTCATGCGCTTGCGGCAAATCGTACTCGCACAAAAGACACTTGGTTTACCATCAAAGACACCAGTGTGGACGCGTTTTCGAGTGCATGaGTAAACGTTTTAAATGCCTTGACTGCGGGTGGAGTTTCTCGCACAAGAAGAACTTGAATTTCCACCAGAAAATCGACTGCGGAAGAGTGCACGCCTGTCATGTTTGCGCACGATCGTACAGCAAGTTGCGCAGTTTGAAATTGCATTTGTCCCAGTGCCACGAATTATTTCgTGGGGACACAGGTAAACCACAGCCTTACGTTTGCTCTTGTGGCAGCAAATTCTCCCACTTGAGGAACTACAAGTACCACACGAAGAAACAATGCGGCGTCGCCTTTCCGTGCCCGATTTGCAAGAAATTATTCACAAGAAAATTCAGCGTCAAAGGCCACCTTGTAATGATCCACGTCATaccgtttcaatgcatgtgcGGTAGAAGGTACTCGCACAAAAGGCACCTGGCTCACCATTTGAAGCACGAATGCGGACAAAGGCTTCCGTGCGAAGTTTGCAACAAAAATTTCAGCAGCACGTCCAATCTCAGAAGGCACGTTCAACTAATTCACCGCGCGCCGGTCGAAGGGCTGATAACTGGCGCACTGGGGCCGATGACGTGCAACAATAGCACCTTGTGA
Protein Sequence: MSKFVSALLKTYKPYRCECGSGFEHISRLRHHKKQECQQILPCTVCDKVFRHKGSLKRHMAIVHNASLAIVSIRAIRATKKCKDCPDCNAVHDSANEVDNDKEICPTEFPSLTITAVRRENCAIKDGGDAVKKTVPLKLRRRTGGRGLHRCKCGKSYYRVDSLIRHTRTSCVLVFGPKQNKSKEIPKPLLVKVGNAGRNNCSCECGVKFETAEEFESHKKECKFKAGFVPDQSNVSYDYECWCGKGFNSTWCYYKHRRGCKIFIDAQSTNVTPSGRIYLRGRPGPSNIKIERKSSDDDSSSNSSTLQNSSAKLESSFYDTSTIKVKLEPDGKTDRVQFKCKCGRAFSTLSGLHAHSRFCPLQIRKLAFKCHCERSYSSRSALAKHQVIKHGKVSGPKKIVKNIVKKTQPAVPVEEPSTCVCGKQFANKMLLARHVQNTCGFDLRCPLCGKNHPIKQLLYGHMKKQHGIIPETVYPFRPEDQVANRQHSCACGKSYSHKRHLVYHQRHQCGRVFECMSKRFKCLDCGWSFSHKKNLNFHQKIDCGRVHACHVCARSYSKLRSLKLHLSQCHELFRGDTGKPQPYVCSCGSKFSHLRNYKYHTKKQCGVAFPCPICKKLFTRKFSVKGHLVMIHVIPFQCMCGRRYSHKRHLAHHLKHECGQRLPCEVCNKNFSSTSNLRRHVQLIHRAPVEGLITGALGPMTCNNSTL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -