Tnot015543.1
Basic Information
- Insect
- Tupiocoris notatus
- Gene Symbol
- -
- Assembly
- GCA_037159825.1
- Location
- JASJUZ010000451.1:409223-413666[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00026 0.027 15.3 4.7 1 23 177 199 177 199 0.98 2 10 0.00014 0.015 16.1 4.0 1 23 205 227 205 227 0.96 3 10 4.6e-05 0.0048 17.6 5.1 1 23 233 255 233 255 0.98 4 10 7.2e-06 0.00075 20.2 3.6 1 23 261 283 261 283 0.97 5 10 3.5e-05 0.0037 18.0 1.7 1 23 289 311 289 311 0.96 6 10 0.0015 0.16 12.9 0.1 1 23 317 339 317 339 0.97 7 10 0.0062 0.64 10.9 0.1 3 22 346 365 344 365 0.95 8 10 2.1e-05 0.0022 18.7 0.0 3 23 390 410 389 410 0.98 9 10 5.1e-06 0.00053 20.7 2.0 1 21 446 466 446 467 0.94 10 10 8.2e-06 0.00085 20.0 6.0 1 23 478 500 478 500 0.98
Sequence Information
- Coding Sequence
- ATGCCACAGCCCGACGGAAAATCAAAACCGACATTCCCTGCCCGTCTTCGGTTGGTTGGATGTAGAGGAGATCGGATTTTGGATCCAATCAAAGCCGTAAGTGATCACCTATCCGAGCGCATATACTTGGAATCGAATGACGACTCGCTCTCCTACGCCGATGGGAGCGCTAGCACGTCTCTAGTCAGGATCAAGAAACAGGATCAGGAAGTCTCGTGCAAATTGGAGGAGGACAGCCCGACGACAATGAACAACAATCTAATGTTTCGTAGTATGTTCTTTATGAACGATGAGCCGCGCCACTTCCTCGCACCGCACCTCCCCGTCCTTTCGAACGAGGCAgagtattttcagaaaaggcaGCAGCAAcaacagcagcagcagcaacaACAACCAGTCAATTCACCAGCTGCGACTACGACCGGACCCACAGTGTCACACCAGCTCAACACAGTCGCATCTCAGACGGTGATCGGCGAAATACCGACACAAACCATCACAAAAATCCAGCCGGTTAAACAGAGGCCGCATACGTGCGAAGAGTGCGGCAAAACTTTCCTATTGAAGCACCATTTGGCAACGCACATTCGTGTTCACACTGGAGAGCGGCCTCACGTCTGCCCCGAATGCGGCAAAACTTTCGCTCTAAAGCATTGCCTGTCTACTCATTTACTACTTCACAGTGCTGAACGCCCTTTCAAGTGCAATGAGTGCAACAAAGCGTTCACTCTTAAGCATCATTTGGTAAGCCATGAGAAAATGCACACTCGCGAACGTCCGTTCGAATGCCGTGAATGCGGGCAAACGTTTGCTCAAAAGAGGCACTTGAGCACGCACATGAAATTTCATTCGGGAGAACGTCCTTTCTCCTGCCAGGTGTGCGGTGAGACATTTACTCGCGAGGAACACCTCGTGATGCATTCGCGGTTTCATGGCGGTCTTCAGCCGTACATTTGTCCCGATTGCGGAGCCGGATTCCTCCGCAAATTTCAATTGGTCGAGCACGAACGTCAACATGGCCGTTGTCCTGATGCTTGTCCAACGTGTGGAAAGGAATTTCTCCAGAAGCGGACGCTCCTACTTCATGTGCGCACCTGCGGAATTGCTCCCAATCCGCACCATACACAGTCCGTGACCGAACAAGTTCCCAACCAACCGACAAGAGCTTGCAAgGAGTGCGGCGAAGCATTCAACAGCGCCGAGGGTCTTGCTCTGCATATGCGGTTGCACATTGGTGATCACAGTTTCCTATCGGACATTTGCAGTTTAGCCGCGTCTCTGAAGCAAGCGGCCGGCACGCAGACCGCTCATCTCACCCTGATGAATAAGAAAACCCACGTTTGCTCTGATTGTAACCGCAGTTTCACGCAGAAACACGGTCTCAATCAGCACATGCTGCGTTACCCGAACGGTGCTTGCAAACTGAAGCCTTTCCGTTGTGAAAAATGCGGAAAATGTTTCTCGCAGAAAAACCACTTAGTTTTACACGAGCGGCAGCACATGGAGCCGAGCGAAAGAAGCGAGTTGAAACATCGCAACCATAATAACAGTCATAACAATGCGAACAATACAAGCGCTAATTCGAACAATGGTTCGATTGAAAACGCTCAAGCTTCACTGATGAGACAGTTGGAATTGGACGGGGTAAGGCAGGTTCAAGTGAACCAGCAAATGCCGCACCAGCCAAAAACCCATCTTGTCCTACACGAACGGCAAATGGACGCACTTGAAAGGGCCGAACTCAACAAACATCGGACTCTCGCCGAAGGGAGCCAAATCATGCGTCACATGCAGCTTGTCGAACATGAACAACAAACCCAGCAGCAACCTCAGCAGCAGCAGTTAGGAACGATGAAAAATCACCATATTCTTCACGAAAGAATGGAAGAGAAACATCAAGTGATGGATAATCAGAGCGTCCTCATGAGACATTTGGAAATAGCTGAAGCGCAAAAAGTTTCCCAACAGCAGCAGACTGCGCCGCAGCAGATGCAGCATATCAAGCCGAATCATCACATTCTTCACGAGCGGCAGATGTCTCCATCCGATCGTCCCGAAGTATCGCAACAGCTGAAACATCGCAGCATGGAGCCGATGGATACGTCACAAACGTCAATGATGAGACATCTCGACCATTCGATGGCGCACGGTCAACAATAA
- Protein Sequence
- MPQPDGKSKPTFPARLRLVGCRGDRILDPIKAVSDHLSERIYLESNDDSLSYADGSASTSLVRIKKQDQEVSCKLEEDSPTTMNNNLMFRSMFFMNDEPRHFLAPHLPVLSNEAEYFQKRQQQQQQQQQQQPVNSPAATTTGPTVSHQLNTVASQTVIGEIPTQTITKIQPVKQRPHTCEECGKTFLLKHHLATHIRVHTGERPHVCPECGKTFALKHCLSTHLLLHSAERPFKCNECNKAFTLKHHLVSHEKMHTRERPFECRECGQTFAQKRHLSTHMKFHSGERPFSCQVCGETFTREEHLVMHSRFHGGLQPYICPDCGAGFLRKFQLVEHERQHGRCPDACPTCGKEFLQKRTLLLHVRTCGIAPNPHHTQSVTEQVPNQPTRACKECGEAFNSAEGLALHMRLHIGDHSFLSDICSLAASLKQAAGTQTAHLTLMNKKTHVCSDCNRSFTQKHGLNQHMLRYPNGACKLKPFRCEKCGKCFSQKNHLVLHERQHMEPSERSELKHRNHNNSHNNANNTSANSNNGSIENAQASLMRQLELDGVRQVQVNQQMPHQPKTHLVLHERQMDALERAELNKHRTLAEGSQIMRHMQLVEHEQQTQQQPQQQQLGTMKNHHILHERMEEKHQVMDNQSVLMRHLEIAEAQKVSQQQQTAPQQMQHIKPNHHILHERQMSPSDRPEVSQQLKHRSMEPMDTSQTSMMRHLDHSMAHGQQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -