Basic Information

Insect: Tupiocoris notatus
Gene Symbol: -
Assembly: GCA_037159825.1
Location: JASJUZ010000521.1:172421-176619[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00069 0.072 13.9 0.8 1 19 252 270 252 274 0.89

2 12 0.032 3.4 8.7 0.2 2 23 277 299 276 299 0.95

3 12 1.5e-05 0.0016 19.2 6.5 2 23 386 407 385 407 0.97

4 12 0.00022 0.023 15.5 2.9 1 23 413 435 413 435 0.97

5 12 0.00024 0.025 15.4 2.7 1 23 441 463 441 463 0.98

6 12 2.7e-06 0.00028 21.5 1.2 1 23 469 491 469 491 0.98

7 12 0.00016 0.017 15.9 1.4 1 23 497 519 497 519 0.99

8 12 0.00033 0.035 14.9 1.7 1 23 527 549 527 549 0.98

9 12 2.2e-05 0.0023 18.7 0.2 1 23 555 577 555 577 0.96

10 12 1.3e-05 0.0013 19.4 1.1 1 23 583 605 583 605 0.98

11 12 0.0004 0.042 14.7 0.2 1 23 611 633 611 633 0.97

12 12 1e-06 0.0001 22.9 1.2 1 23 639 661 639 661 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00069	0.072	13.9	0.8	1	19	252	270	252	274	0.89
2	12	0.032	3.4	8.7	0.2	2	23	277	299	276	299	0.95
3	12	1.5e-05	0.0016	19.2	6.5	2	23	386	407	385	407	0.97
4	12	0.00022	0.023	15.5	2.9	1	23	413	435	413	435	0.97
5	12	0.00024	0.025	15.4	2.7	1	23	441	463	441	463	0.98
6	12	2.7e-06	0.00028	21.5	1.2	1	23	469	491	469	491	0.98
7	12	0.00016	0.017	15.9	1.4	1	23	497	519	497	519	0.99
8	12	0.00033	0.035	14.9	1.7	1	23	527	549	527	549	0.98
9	12	2.2e-05	0.0023	18.7	0.2	1	23	555	577	555	577	0.96
10	12	1.3e-05	0.0013	19.4	1.1	1	23	583	605	583	605	0.98
11	12	0.0004	0.042	14.7	0.2	1	23	611	633	611	633	0.97
12	12	1e-06	0.0001	22.9	1.2	1	23	639	661	639	661	0.98

Sequence Information

Coding Sequence: ATGACTACTCTCGCCGTTGATCCCTTAGCAGAATTCGGCGAATTGTGCCGGCTCTGCGGAGCGAAAACTAGTGTTTTGCTAGGGCTGCACATTTTCGACAGGGAAGGAAGCCTACGAGAGATCTGCAAGAAAATCAAAGCTTGCCTTCCTATTCAAGTCACCAACGATGACAAACTGCCCAAAATGGTTTGCGAAGAATGTGTCTACAAACTCGACGAGCTTTATGAGTTCAGAGAGAAAAGCGTCAAGACTGAATATTTTCTCACGAGCATGCTGAAAGGTTTAATGGCCACACCTCGTGTTTGCAATCAGCAATATGCCGTTCAACGGTCGACTGTTCAAATTGGGAATTTAATTTGCGGCCAGAATTTGCATTCCTCGGAAATACAGCTTCGCCCCCAGGTTGAAGTTCATTTAACTGACCATTCGATACAATTGGAGTCGATAATCACCAGTTTGCCGTTGAACGAGCCTAGCATGGTAAAAAACGAATCAGAAATTGAGGGGATGAAAAAGGGCAATGACAATATGGGGCCTAGAAGCGTTGAGACAGATACGAACGACAGCCTACCTACTTCTGCTGACGTCGACCACAGTCAGGACGATTGCACAATAACTGAGCATATAGTGAATAATATCCGAGTTGCAGATATCAGATCTCTCCAGGCAATGAGTGGAGCAGCTCTGAAAGCGTCAGACGTCGATGGAGACCGTCATTTCATCGTTACAGCAGCCCACAGTGACCATCCTTGGTTTTTCTGTGACATTTGTGGTAAACCGTTCGGTGACAGCAATGAATTTCAGGCCCACTGCGAAATTCACTGGAAAAAATGCTCAGCCTGCGGTGTCACCTGTGCCAATGACGAGGCTCTTATGGTTCATTTGAGAGAAGCTCACGATGGCATTTCTTTAGTCCAACAAGTGCATATAGATTCCCCACCAGTGCCGCAAAGTGGCCAGAACTCGCATGAGGATAACCAACCCGAGGAAACTCAAGCGACGTTACCTGAGCAAATTTCACAAGAGCAGATCGTGATATCGTTGCCCAaggttgaaacgaaaaatgactCAAGGGATGCGAATGAAGTATCTCCTTCTCCTTTGCCGCAGCCTGAAAACAATACAGATAAATCCTCGACGGCCGGCGACCCTAAATCATGTTCCCAGTGTCATAAACGTTTCAGGACGAATTACAAACTTACTGAACACATGCGAAAACATACAGGCGAAAAGCCGTACAAATGTTTTGAATGCAAGAAAACGTTCTGTTCGAAAATCGGCCTTGCTCAGCATGAAGCTCGTCACACAGGTCAGTACGACTTTACTTGCAGTACATGCGGAAAAGGCTTCCAGTGTAAGTCTTACTTGATAGTCCATCAACGAGTTCATAGCGACCTGAAACCGTATCCTTGTGAAACGTGTGGGCgcaatttcaaaacgaaacAGAGCCTGCTCGACCACCAGAATCGCCATCTTGGCGTGAAGCCTTACCAGTGTGAAGTGTGCGGGCGAGGTTTCATCACTAAAGGCTTGTGTAAATCGCATCAAAAGGTTCATTCAGGCACTGACAATCGCCAGTTCCCATGTTCCGTGTGCTGTAAACTGTTTGTTAGTAAGTCGTATTTGGCCACCCACATGCGTATTCACACAGGTGAGAAACCGTTCATGTGTGAAGTGTGTGGTAAGGGTTTTGTGACGCGAgtcgatttgaaaattcattctaCAATGCATAcgggtgaaaaaagtttcgtTTGTGAAGTTTGCGGAAAAGCGTTTGCAAGGCGGGACGCCCTACGTTGTCACAGACGTAGTCATACCGGTGAGCGACCATACATCTGTGATATTTGCGGTCAAGGATTCACTCAGTTTTCGCCTATGGCAACTCACAAACGTTTACATACAGGAGAGAGGCCTTACGCCTGTGATATTTGCGATAAAACATTTGTATCTCGGTCGACGCTAATGTCTCACAAGAAGAAACACGCATCGTTTCAAAAACCATCCACTCCCATCGCTACCCAGGAGGAACCTTCGCCTTTCACTGATGTGTATGTTGTCAGCTCCGATTCCCAGATATTCGTCGATGAAACTGCGAACACCGCTCCACAGCCTCAGTGA
Protein Sequence: MTTLAVDPLAEFGELCRLCGAKTSVLLGLHIFDREGSLREICKKIKACLPIQVTNDDKLPKMVCEECVYKLDELYEFREKSVKTEYFLTSMLKGLMATPRVCNQQYAVQRSTVQIGNLICGQNLHSSEIQLRPQVEVHLTDHSIQLESIITSLPLNEPSMVKNESEIEGMKKGNDNMGPRSVETDTNDSLPTSADVDHSQDDCTITEHIVNNIRVADIRSLQAMSGAALKASDVDGDRHFIVTAAHSDHPWFFCDICGKPFGDSNEFQAHCEIHWKKCSACGVTCANDEALMVHLREAHDGISLVQQVHIDSPPVPQSGQNSHEDNQPEETQATLPEQISQEQIVISLPKVETKNDSRDANEVSPSPLPQPENNTDKSSTAGDPKSCSQCHKRFRTNYKLTEHMRKHTGEKPYKCFECKKTFCSKIGLAQHEARHTGQYDFTCSTCGKGFQCKSYLIVHQRVHSDLKPYPCETCGRNFKTKQSLLDHQNRHLGVKPYQCEVCGRGFITKGLCKSHQKVHSGTDNRQFPCSVCCKLFVSKSYLATHMRIHTGEKPFMCEVCGKGFVTRVDLKIHSTMHTGEKSFVCEVCGKAFARRDALRCHRRSHTGERPYICDICGQGFTQFSPMATHKRLHTGERPYACDICDKTFVSRSTLMSHKKKHASFQKPSTPIATQEEPSPFTDVYVVSSDSQIFVDETANTAPQPQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -