Tnot007749.1
Basic Information
- Insect
- Tupiocoris notatus
- Gene Symbol
- -
- Assembly
- GCA_037159825.1
- Location
- JASJUZ010000194.1:351545-356531[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.2 1.3e+02 3.7 0.1 3 23 7 27 6 27 0.94 2 15 1.1 1.2e+02 3.8 0.8 1 23 391 414 391 414 0.92 3 15 1.5 1.5e+02 3.5 0.2 5 23 441 460 438 460 0.89 4 15 0.0029 0.3 12.0 1.5 2 23 466 488 466 488 0.96 5 15 3.4e-06 0.00036 21.2 0.8 2 23 491 512 490 512 0.96 6 15 2e-05 0.0021 18.8 1.4 1 23 518 540 518 540 0.95 7 15 1e-05 0.0011 19.7 1.9 2 23 547 569 546 569 0.93 8 15 0.0047 0.49 11.3 0.6 5 23 582 600 581 600 0.96 9 15 0.00023 0.024 15.5 2.7 2 23 606 628 605 628 0.97 10 15 0.00035 0.036 14.9 0.2 2 23 678 698 677 698 0.96 11 15 0.0042 0.43 11.5 0.6 5 20 708 723 706 726 0.88 12 15 3.8e-06 0.0004 21.0 0.2 1 23 734 756 734 756 0.98 13 15 1.2e-05 0.0012 19.5 2.5 1 23 762 784 762 784 0.98 14 15 1.2e-05 0.0013 19.5 3.9 1 23 790 812 790 812 0.99 15 15 0.00038 0.039 14.8 8.1 1 23 818 840 818 841 0.95
Sequence Information
- Coding Sequence
- ATGGACGGTCTCGTCGCATGTCCCGTTTGCACTCTCTACCTAAGAGAAGGCATGTCTCTAAACAATCATCTGGAGACTCATCCTAAGGAACAAGTAATTGAGGCTTTGGTCAGATGCGTCAGCTCCGAAAGAGACCGCTCGATTACCTCGTCGGGATCTACCCATCCGTTCCAGGTTGTTACTGAAGAACACACCATTTTTGGCCGCCAACAGGTGACTGCAAATGTTATCGGTCCGATAGTCACTTACCCAATCTTCTCAGGGCAAGGAATCCTGCACAGTCCCACTATTGCTCAGTCTGTCAATGGCTCTGATCAGTATGTGCAGCATCGCACCTCCCCTCAGCTACAGTTTCAGAAAAGCACCAATCACCAGGACAGCAGTCCTAACAATGCTGACAGGCGGTCCCTTGATGGAGGAAATGTGACTCCCCTAGGAGGCCACGTACTGACGACACTCGTTAATGTCTCGTCCGGGCAACCAAGTCTCACTGAAGAATTGAGTGGTAAAGAAGAACAGTATGAAACAGTCGATGATGAAATGTACATTGAAGAGCCGGACAagGTGCTCACTAAAATTGAACCAATGACAGTTCTATCGTCGATTTCTtccgaagaagaagaagatgacGTGGAGAAGCCAACTGGTGAGCCACCCTCGGTCAACAATCTGCCACCATCCTCAGCTTACAATGACGGCGGTGATGATGACGACCCTGCTGATGATGAAGTAGTTCATACCAAAGTGAAGCCGGTCGATGGTCATTATGATCATCATTCGGGCACAAAATCGCCAACTATGCAAATGGTGGCGGCAGATCCACCAGTCCCTATCAACTTCAAGTCGGATTACTTTGACACGGACGATGCTCTCCAAGGGACACCTACTATGGGAGATTCATCTAACCATGGATATTATGATGACGAACTTATGGAAGATTATCAGCGGCGCCAATATATTGAAGAGCAAGAGGATGATGTTGAGGCACGTAGTGATTCAGGATTGCAGAACATTCAAGCTGATGAGTGCATGCCAGCCAGAGGCGAACTCTCAGGCCACGGCAGCGTCAATACAGCCCATTCCTGGAATCATTGTATGATGTTTCTACTGAAGGACGAACTGAGAATGTTGGCGCCCATTTGGGAAGGGAAAACCGAATCAGCTCGCCGTTACACGTGTCTCTACTGTGACGGGGAGTTCACTTGCCCCAAAGAACGGCGCGTTCATGTGGCTACTGTGCATTGCAGTGCTCCCACAGCTGATACAAAGCCTGGAGATCTTCTGGGTACGAACAACCAGCCAAGGGCCATCATGTGCATCAAGTGCGGCCTCCAGTTAGAATCCCTCAAAGACCTCAGGAATCACGTGAAAGCAGAACACAAAAAAGTGACACGCCAGTGCTGCGTGTGCCAAGAAGAATTCAAATCGCAAGAAGAGTACACAGACCACATCACCAAAGTGCATCCCCTTGAATGTCGAACCTGCGGCAAAACTTTCAAATCCAAATCGAGTCTTGTGAGTCATGCAAAAATCCATTTGATGGTGAAACCGCATGCGTGCACGCTTTGCCCCAAGACGTTTATCACAAGCCAGAAACTGAAGGAACATATGAACGGCCACACGGGATATGCTCCCATCCAGTGCAATATGTGtgagaagaaatttaaaagGTATTCGAATCTAAAACAACACAAGGACAGTGTACATTTTCAAGTGAAGAAACCTGCTAAGGAATTTTTCTGCGAGTGTGGTGAAACATTTGCTACCAAAAAGAAATTTGAATGGCACAAGGAGACGCACGACGAGAAACCGAAACAGTGCATGTACTGCAGTGAACGGTACATCCACAATACGAGTCTAACGCGACACATTCGTAAGGCCCACAACTGCGAGTATCTACCGCCTGAACCGGGAGCTGTCAACTCTGATACTCCTAGTATCAGTCCCACCAATAGCAATGCTACCAACAGCACCACAACAATTAGTAATAGCAGTGGCGGAGGAGGTGGAGTTATAAAGAAGAAGAACGTTGTCTGCCCGATTTGCAATTTGACTTTTGTCAACACATCGCTGCGCGCACACATGAAACAGCATGGCACTGTTAAACAGTTCGGATGCATTGTTTGCGGCAAACGTTTCTACACAAAATGGAACCTCCAGCTGCACAGGTGGACTCACGCTTCCCGGCTGTCCAAGCCGTACAAATGTACCCTGTGCAAGGGCGCGTTCATCCGCCAAAGCGACCTGCAGGCTCACATCCGAGGCCACTTCAACAGCAAACCCTACACGTGCAATCATTGCGGCATGCAATTCAACCGAAAACCGAACTGGACTCGTCATGAGCGAGAACATctcaacgagaaaaaatacgtGTGCCAGGAATGCGGCAAGTCATTCCATCGGCACTATTATCTAGTCGAACATGCTCGTACTCATTCAGGTGCAAAGCCGTACGCCTGTCACATTTGCAACAAGACTTCATCAACCAAGTCGAATCATAATAAACACATACGGACTCACCACGCCCGTGAAGCTGTCAACACTGAATCCTAG
- Protein Sequence
- MDGLVACPVCTLYLREGMSLNNHLETHPKEQVIEALVRCVSSERDRSITSSGSTHPFQVVTEEHTIFGRQQVTANVIGPIVTYPIFSGQGILHSPTIAQSVNGSDQYVQHRTSPQLQFQKSTNHQDSSPNNADRRSLDGGNVTPLGGHVLTTLVNVSSGQPSLTEELSGKEEQYETVDDEMYIEEPDKVLTKIEPMTVLSSISSEEEEDDVEKPTGEPPSVNNLPPSSAYNDGGDDDDPADDEVVHTKVKPVDGHYDHHSGTKSPTMQMVAADPPVPINFKSDYFDTDDALQGTPTMGDSSNHGYYDDELMEDYQRRQYIEEQEDDVEARSDSGLQNIQADECMPARGELSGHGSVNTAHSWNHCMMFLLKDELRMLAPIWEGKTESARRYTCLYCDGEFTCPKERRVHVATVHCSAPTADTKPGDLLGTNNQPRAIMCIKCGLQLESLKDLRNHVKAEHKKVTRQCCVCQEEFKSQEEYTDHITKVHPLECRTCGKTFKSKSSLVSHAKIHLMVKPHACTLCPKTFITSQKLKEHMNGHTGYAPIQCNMCEKKFKRYSNLKQHKDSVHFQVKKPAKEFFCECGETFATKKKFEWHKETHDEKPKQCMYCSERYIHNTSLTRHIRKAHNCEYLPPEPGAVNSDTPSISPTNSNATNSTTTISNSSGGGGGVIKKKNVVCPICNLTFVNTSLRAHMKQHGTVKQFGCIVCGKRFYTKWNLQLHRWTHASRLSKPYKCTLCKGAFIRQSDLQAHIRGHFNSKPYTCNHCGMQFNRKPNWTRHEREHLNEKKYVCQECGKSFHRHYYLVEHARTHSGAKPYACHICNKTSSTKSNHNKHIRTHHAREAVNTES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -