Basic Information

Insect: Tupiocoris notatus
Gene Symbol: -
Assembly: GCA_037159825.1
Location: JASJUZ010000719.1:284127-288231[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.11 12 7.0 0.3 1 23 276 298 276 298 0.94

2 12 8.5e-06 0.00089 19.9 1.5 1 23 306 328 306 328 0.98

3 12 6.5e-05 0.0068 17.2 0.7 1 23 335 357 335 357 0.97

4 12 1.5e-05 0.0016 19.2 0.6 1 23 363 385 363 385 0.99

5 12 3.3e-05 0.0035 18.1 3.2 1 23 392 414 392 414 0.98

6 12 1.3e-05 0.0013 19.4 1.0 1 19 420 438 420 442 0.93

7 12 4.2e-06 0.00044 20.9 0.8 1 23 448 470 448 470 0.99

8 12 4.1e-06 0.00043 20.9 0.8 1 23 476 499 476 499 0.96

9 12 0.00024 0.025 15.4 0.3 1 23 505 528 505 528 0.95

10 12 1.9e-05 0.002 18.8 3.0 1 23 534 556 534 556 0.99

11 12 7.4e-05 0.0077 17.0 0.4 1 23 562 584 562 584 0.94

12 12 0.00011 0.011 16.5 0.2 1 23 590 614 590 614 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.11	12	7.0	0.3	1	23	276	298	276	298	0.94
2	12	8.5e-06	0.00089	19.9	1.5	1	23	306	328	306	328	0.98
3	12	6.5e-05	0.0068	17.2	0.7	1	23	335	357	335	357	0.97
4	12	1.5e-05	0.0016	19.2	0.6	1	23	363	385	363	385	0.99
5	12	3.3e-05	0.0035	18.1	3.2	1	23	392	414	392	414	0.98
6	12	1.3e-05	0.0013	19.4	1.0	1	19	420	438	420	442	0.93
7	12	4.2e-06	0.00044	20.9	0.8	1	23	448	470	448	470	0.99
8	12	4.1e-06	0.00043	20.9	0.8	1	23	476	499	476	499	0.96
9	12	0.00024	0.025	15.4	0.3	1	23	505	528	505	528	0.95
10	12	1.9e-05	0.002	18.8	3.0	1	23	534	556	534	556	0.99
11	12	7.4e-05	0.0077	17.0	0.4	1	23	562	584	562	584	0.94
12	12	0.00011	0.011	16.5	0.2	1	23	590	614	590	614	0.94

Sequence Information

Coding Sequence: ATGACAGCGGACGCAGAGAAAAATCCGGTCTGCCTGATATGCAATGCAAGCATTGGCGTTTCAACTCGGAACAATTGCCCGATTTTCCACTTGAACGTCACCACATCCGAACAACCCGTGGCTAACATACTTAGCGTTGTGCTAGGtcttgaagtaaaaaaagagGCAGTGCATAGCGAGATTATCtgtaaaaaatgttacaaACTTTGCAACCAAGTCGACGAACTGCACGAGCGGTTGGCCGAGGTGAAAATGGAACTCAACAGTTACTACCAGAAAACGTTGAGgaaaCTAGAAGGTCTCGAAGATGACGAAAGTGAACTCCTAGGCCCCGAGCCTGCACCGCCGAAGCCAGCTCCAATGGGAGTCTCGACAATAAAGCGCGGGCCTGGGAGGCCCAGAAAAAATAAGCGGGAAGATGATACGCCTAGCAAGTCAAAGGAAGTAGTGACGGGGGAGATCGAAGTCAGCGACGATGATGACGATTTAGCCGATGAAGACTACGTTGGAGTTGGAGTTGATGATGAAAACGACGAGGATTATGTGCCAAAGAGCGCTAGCAAAGGGAAAAAGGGCAACGAGTCTACGGGTAacataaaaaccgagaaattTGATGACGACGATGACGATTCGGACGAAAAATCATCACCCGGTAGTAGGAAGAAGGGTAGCAAACGTTCTGaaattatgaatattattccGGCAATGattGTCAGTCGAAACAATGGTACCTATACTTGTCTGTTGTGCTCCGCTGAGGATAACGTAAGGGGAGATTCTCGTAACATTACGAACCACATGAAAAGTGAACATAACATACGTCTGTATATCTGCGACATGTGCGGATTGGAATTCCTCAAAAGGTCTGAAATGTCCGCCCATTTTGACAAACATGTGGGAACTGAAGAGGGCAACTTCACTTGTGAAATATGTAACCGGGTGTTTTCAAATCTACGGCTCTATCGAGTTCACAAGCGTATGCACTTACCGCAAAATAAGAACCATGTATGCGAGCAATGTGGGAAAGCGTTCTTATCACGAGGTACTCTGGAAGAACACATGAACAAGCACGCTGGTATTCGTCCTTACCAATGCGGCGAATGTGGCAAAGATTTTGCTTCAAAATATTCAGCCAAGTCGCATGAGAAAACACATCAAGAGCGCCCTCGGCCTCACAAATGTTTACAGTGCTCAAAAACGTTCATCACCGAATCGAACCTTCTTCAACACGAAAAGACACACACTGCGTCCAAAACTTATGCCTGTCATGTTTGCGGTAAAGCATTCAGTTCCCCTCGCAACCTTGAAGTGCACTGCGTCATCCATTCAGGGTACAAACCGTACACTTGCCGTATTTGTAACAAATCATTTGCGCGCAAGGCGGAAATTCGGGATCATGAAAGGACTCATACTGGTGAGAAACCTTATCAATGTGAATTCTGCGGAGCAACCTTTGGCCAAAGGAGCAACTTGCAGTCTCATAAGAGAGCTACACATTATGACGACAAAAGATACCAGTGCATCGAGTGTGGCAAAGCTTTCAAGCGAAGACGTCTTCTCGATTATCATATCAAAGCTGCACATACGGGTGAGCGTCCGTACAAGTGCCAGATCTGCAGTGCCACTTTCATATAccctgaacatttcaagaagcACAGAAGGATTCACACTGGAGAAAAACCATACCTGTGCGAAGTGTGCGGCAAAGCCTTCAACAGTCGAGATAATCGAAATGCTCACCGATTCGTCCATAGTGACAAAAAACCATATGAGTGTCTCGTGTGCGGTATGGGTTTTATGAGAAAACCCCAGCTTTACAATCACATGCAGACTCAGGGTCATATCAATGACACAATCGTTGTAAACCAACCACGACTCACCACAGACGAAGAGTTCATCACTCAGGAACATGAAGCTCAAATGGAAATGATCATTGGCGACGGTCAAGACAAATGGGCCACTGAGCAAGTGATTGATGAAGGTGGTGAGtTGATAGCGTCACACGAAGGTGGTGGTCAGACAAAAATGTACATACGTGAACTCAGAGGCAAAGATGAAGCAGGCGAGGAAGTTCAATACACAGAAGAGGTTGGTCATCTCATCATCGATGGACAAGTGCAATTCGCTGATGGCGAGACGCTTGAGCTGGACGGGAACGAAACCCTAGTCGAAGGCACACCAATCGTCGTTCCTGGACATGGAACTGAATTCACAGTTGAGGCGACTGAAGGTGCCACTGTGGAAACGCCTAACGGACCTGTCCGTCTCGTCCACATCTCCTTGCCTGAATCTGCTGACCCGAACCAACAGGGAGCCTGGTTTAATATTGTACCACATTAA
Protein Sequence: MTADAEKNPVCLICNASIGVSTRNNCPIFHLNVTTSEQPVANILSVVLGLEVKKEAVHSEIICKKCYKLCNQVDELHERLAEVKMELNSYYQKTLRKLEGLEDDESELLGPEPAPPKPAPMGVSTIKRGPGRPRKNKREDDTPSKSKEVVTGEIEVSDDDDDLADEDYVGVGVDDENDEDYVPKSASKGKKGNESTGNIKTEKFDDDDDDSDEKSSPGSRKKGSKRSEIMNIIPAMIVSRNNGTYTCLLCSAEDNVRGDSRNITNHMKSEHNIRLYICDMCGLEFLKRSEMSAHFDKHVGTEEGNFTCEICNRVFSNLRLYRVHKRMHLPQNKNHVCEQCGKAFLSRGTLEEHMNKHAGIRPYQCGECGKDFASKYSAKSHEKTHQERPRPHKCLQCSKTFITESNLLQHEKTHTASKTYACHVCGKAFSSPRNLEVHCVIHSGYKPYTCRICNKSFARKAEIRDHERTHTGEKPYQCEFCGATFGQRSNLQSHKRATHYDDKRYQCIECGKAFKRRRLLDYHIKAAHTGERPYKCQICSATFIYPEHFKKHRRIHTGEKPYLCEVCGKAFNSRDNRNAHRFVHSDKKPYECLVCGMGFMRKPQLYNHMQTQGHINDTIVVNQPRLTTDEEFITQEHEAQMEMIIGDGQDKWATEQVIDEGGELIASHEGGGQTKMYIRELRGKDEAGEEVQYTEEVGHLIIDGQVQFADGETLELDGNETLVEGTPIVVPGHGTEFTVEATEGATVETPNGPVRLVHISLPESADPNQQGAWFNIVPH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -