Tnot016100.1
Basic Information
- Insect
- Tupiocoris notatus
- Gene Symbol
- -
- Assembly
- GCA_037159825.1
- Location
- JASJUZ010000480.1:131194-135947[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 4.3e-06 0.00045 20.9 0.9 1 23 109 131 109 131 0.98 2 13 4.1e-05 0.0043 17.8 0.2 3 23 138 158 137 158 0.99 3 13 0.00071 0.074 13.9 0.1 1 23 242 264 242 264 0.98 4 13 0.0056 0.58 11.1 0.2 2 23 271 293 270 293 0.93 5 13 0.0043 0.45 11.4 1.0 1 23 319 341 319 341 0.96 6 13 0.029 3 8.9 0.4 1 23 348 371 348 371 0.95 7 13 8e-06 0.00083 20.0 0.8 3 23 377 397 376 397 0.98 8 13 8.4e-07 8.8e-05 23.1 0.4 2 23 408 429 407 429 0.96 9 13 5.2e-05 0.0054 17.5 0.3 1 23 471 493 471 493 0.94 10 13 4.9e-05 0.0051 17.6 0.3 1 23 499 521 499 521 0.98 11 13 4.2e-05 0.0044 17.8 0.3 1 23 527 549 527 550 0.96 12 13 0.074 7.7 7.6 0.5 1 23 561 583 561 583 0.95 13 13 0.0016 0.16 12.8 0.6 2 23 873 894 872 894 0.97
Sequence Information
- Coding Sequence
- ATGGCGAACACTATTGTCTCAACAAGCTCAGACGACAACTATGGATTCAGTCTTGAATGGATTGCCGAAGGATCGGGAATCGGAGAAGAAATCTGCGGCGTCGTTGGCGTCTCTTCGCCTATCATtcccaaaatagaaaattgcgACACGGACTACATAGAAATACAGTTGCCTGAAGAAGAAGTCATAGCAGCCCAATGGGACGAAACTGATCCCGTTGAAGAATTAGAAGTAGGAAGCCTAGCTCATGATGTTCCCGAACTGAACGGAGATGTTCTCGTTCCTTTGGATGAAGAGCAGGATGAATATTCAAGATTGCATCCGTATCCTTGCGACTTCTGCAGCCGGCGGTTTTCTAAACAAGCTACACTTACTGTTCACATGCTCACGCACCAGCAGCGCTTACACGGCTGTAACATTTGCGACGCGACTTTCCGACGTAAACTCGAACTAGTTGAACACATGAAAATCCACTCGTTTCCTCCGGCCGAATCGGAAGCGAACGACGAATTAAGCGAATTGTGTTTCGTCGACGATAGGAAGCATTTAAaggtgaaaaagaagaaaaagaaaaaagcgaATCCGATGAAGACACCCGACGCGTTGACACAGAGCGATATGGATTTTATAAATTGCCTCAGTGACATTAAGtctGAATTCGACGATGAGCAATACGTCGAAGACCAAGAAATCAAGTTTCCTGTTATTGATCCGAGTCGGCCTTACGTCTGTCAGTTCTGCGGTGTCGGATTCGCCCGTGAGAAAGCGCTCGTCTCGCACAAAATGATCCACGCTGGCGATCGTTCAGTTGAATGTGAATACTGCAATGAAATCTTCCAATCTATTGCAATGCTACAGCATCACATCGGCTCTAAACATTCGAAGACCGCTGTCAAAAAAGCGAATAATACTTGCATCCAAAAAAAGTCATCCAAAGAATCGTCCTACGATCCCTTCTCATGCCAATTGTGCCACCTTATATTTAGCTCATTGGAAGGCCTGCTGTCACATAGGGAAAATCATGATATCGATTCCGACATTCACACGTGTGGCATCTGTCGTCGGGATTACGTGCTATTGGAAGAcctcaaaattcatttgaaagaCGATCACACTCAAACGAACGCGTGCAGTCAGtgcgatttgatttttaaagacaAATACACACTGACGAGGCACCTAATGACGCATTATACAacaccgagaaaaaaaactatgctcCCTTGTAATGTTTgcgggaagaaattttctaacaaaGTGACGTTGAAAAGacATGCGGCCACGCATGAGACGAAAGATAAAAGCACGACGAGCGTCCTTTGTACTGAATGCGGCGCTAGCAATTTCGCCGACGGTAAATCCCTCCTGTATCACAGACAGTTGGAGCACGGTATCAACATCGCACGACTGTTTCCTTGCATCGAATGCGGCAAAACGTTCAATTCTAGATCGTCACAGCAGATTCACATTCGTATACATACGGGTGAACGGCCGTACTCTTGTAAATATTGCTGGAAAGCTTTCGGCGATGGAGGAACGCTCAGGAAACATGAGCGGATACATACGGGCGAAAAGCCCTACGTCTGTCCTGTTTGTAGCAAGGCGTTCAACCAACGGGTCGTTCTCAGGGAACATGTAAGAGCCCATCATTCGGGTAAAGCGAAAAGCACCGAGGATTGCTTCCGGTGCATGGTGTGCAATATGTATGTCGATTCATCCGAAGAACTCTGCGCCCACTTGGTCCAACATTCGGACGAAAATACGGCCAAACATAGGATGCCGTCGGTGCGGAAGACGACGTCGCCAAAGAAGAAGAAGGTTGAAAAGCCGCCAAGCCCGTATCCAGCCATGGCGATGCTTCCTGAGCATAATATCACCATTCCACATAGCCCTAAGAAGGAATCTCCTCCTGCTGCGAAGAAGAAATCCGCCAAAAGTATAAAGCAGGATAAATTAGACGCGATTGTGAAGCTTGGGAAAActactttggaaaatatgagctCGATGGCAAAAGGGAAACGAGCGCGTATTGTGAGATCTGGAAAAAAAGGttTCAACAAAGGCCAAAACAAGCGTTACCTGAATAAGAAGGAGAAAGGGAAAACGACCAAGTCGCTGAACAACGGCAGTTACGCTTCAAAATATGTAGTCAGCCAACCGGGCGTTGAAAGTTCGGGGAGCGGTATGGAATACATGGACGACGTCGTTTACGAAGACAATGACGCATTTAATGACGACCTACTCAACTACGATGACGACCTCGCCAACGACGGGGAATCGGATTCCTGCGTAAGGACGCGGCCGCGGACGAAAAACGTATCCTACCACAATATGCGGACCGACCATAAAATGTACGATTTGGCCACTTTCGACGACATAGTCGTCGACGACGCGCACATGCCGTCGTTGGATTTGCCTTCACCAAAAAAACGGAGAGCGtgcaagaagaagaagaaactgAAAGGGAAAACGGGCCGATCGCCCGTCGCTGGGGGCAGCGGCGATAGCCAATATATCAATGGGATTTCCATAGATTCGTCGATGATGGAAAAAGAAGAGCTTATAGAGACGACTATAGTCAGTGACGATTTAGAGATAAAACAAGACGACACGACGACGTGCGACATGTGTAATCAGGATTTCTTCAACGGTGACGATTTCATACGACATTTGCAAAcgcatttttaa
- Protein Sequence
- MANTIVSTSSDDNYGFSLEWIAEGSGIGEEICGVVGVSSPIIPKIENCDTDYIEIQLPEEEVIAAQWDETDPVEELEVGSLAHDVPELNGDVLVPLDEEQDEYSRLHPYPCDFCSRRFSKQATLTVHMLTHQQRLHGCNICDATFRRKLELVEHMKIHSFPPAESEANDELSELCFVDDRKHLKVKKKKKKKANPMKTPDALTQSDMDFINCLSDIKSEFDDEQYVEDQEIKFPVIDPSRPYVCQFCGVGFAREKALVSHKMIHAGDRSVECEYCNEIFQSIAMLQHHIGSKHSKTAVKKANNTCIQKKSSKESSYDPFSCQLCHLIFSSLEGLLSHRENHDIDSDIHTCGICRRDYVLLEDLKIHLKDDHTQTNACSQCDLIFKDKYTLTRHLMTHYTTPRKKTMLPCNVCGKKFSNKVTLKRHAATHETKDKSTTSVLCTECGASNFADGKSLLYHRQLEHGINIARLFPCIECGKTFNSRSSQQIHIRIHTGERPYSCKYCWKAFGDGGTLRKHERIHTGEKPYVCPVCSKAFNQRVVLREHVRAHHSGKAKSTEDCFRCMVCNMYVDSSEELCAHLVQHSDENTAKHRMPSVRKTTSPKKKKVEKPPSPYPAMAMLPEHNITIPHSPKKESPPAAKKKSAKSIKQDKLDAIVKLGKTTLENMSSMAKGKRARIVRSGKKGFNKGQNKRYLNKKEKGKTTKSLNNGSYASKYVVSQPGVESSGSGMEYMDDVVYEDNDAFNDDLLNYDDDLANDGESDSCVRTRPRTKNVSYHNMRTDHKMYDLATFDDIVVDDAHMPSLDLPSPKKRRACKKKKKLKGKTGRSPVAGGSGDSQYINGISIDSSMMEKEELIETTIVSDDLEIKQDDTTTCDMCNQDFFNGDDFIRHLQTHF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -