Tnot008046.1
Basic Information
- Insect
- Tupiocoris notatus
- Gene Symbol
- SALL1
- Assembly
- GCA_037159825.1
- Location
- JASJUZ010000205.1:418537-423703[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00025 0.026 15.3 5.8 1 23 111 133 111 134 0.96 2 17 0.00061 0.063 14.1 0.9 2 23 151 172 150 172 0.97 3 17 5.9e-06 0.00061 20.5 1.1 1 23 178 200 178 200 0.97 4 17 1.9e-05 0.002 18.9 0.9 1 23 206 228 206 228 0.98 5 17 0.0024 0.25 12.2 0.6 1 23 235 257 235 257 0.97 6 17 0.011 1.2 10.1 2.1 1 23 263 285 263 285 0.98 7 17 2.5e-06 0.00026 21.6 0.3 1 23 291 313 291 313 0.96 8 17 3.5e-07 3.7e-05 24.3 0.2 1 23 319 341 319 341 0.98 9 17 0.00098 0.1 13.5 0.9 3 23 350 370 349 370 0.95 10 17 3.2e-05 0.0034 18.1 1.0 1 23 436 458 436 458 0.98 11 17 0.12 12 6.9 2.5 2 22 466 486 465 489 0.89 12 17 1.2e-05 0.0012 19.5 1.7 1 23 540 562 540 562 0.98 13 17 0.0049 0.51 11.3 0.7 1 23 568 590 568 590 0.98 14 17 4.9e-06 0.00051 20.7 0.1 1 23 596 618 596 618 0.98 15 17 0.003 0.31 11.9 3.4 1 23 624 647 624 647 0.97 16 17 0.56 59 4.8 0.0 2 23 651 673 650 673 0.95 17 17 0.27 28 5.8 0.2 1 20 806 825 806 828 0.93
Sequence Information
- Coding Sequence
- ATGGCGGAAACAATCTCTAAAATGGAGCCCGATTCCGACGGGTACACAGAAGAATACGTCTGCGTCGAGGAATATTTCCCATTGGATCTGCACGAAGAAGAAGTCGTCGCCGAGCCGTTGGACGGCCAGGAAATAACAATTATCCAGCCAGTAGATAACCACGATATTTTACACGCGGAGAGCATAATCGTCGAAAGCTACGACCCTGGCGATCCTGCACAGTGGACTACTGAGGAGGTCAATGAAATCGTCATCGACAATAATGAAGAAGACACTTCTCCAGCGTCGGCTGTCATCAAATTGGAAACAGATGCGGTTCAAACACACGTTTACGAGTGCTATAAATGCGCTAAACGTTTCAACTACAAGGACAAACTTTTCAAACACATGAAACTTCATCATGCTCGCGGCGATGATGTGATGATTGAGCGAGAAGGTAAACGGATTTGGACTTGTACTCAGTGCGATAAGACGTTCATATCCAGGAAAGGTTCGATAATCCATCAAAGAACGCACACGGGAGAGCGGCCGTATTCCTGTTCCACATGCCAAAAAAGATTCATCGATTCAAGCACGTTGATGAAACACCAGGTTATTCATCAGGCGGTCAGACCATTCACGTGCCTCGTTTGTCGGCGCGGGTTCAATCAAAAAGTGGCTCTCCAACGACACGAACGGACTCACGGCCAAATCGCCCCAACTTTCAAGTGTAAATTCTGCCCCAAGACGTTTTTAGTCGGCAGTAGTCTTCaagctcacgaaaaaatccactCCGGTATCAAACCGTACACTTGTCAATATTGTCCAAGTCGGTTTCACACTTCGGCTGCGCAGCGGCAGCATGAGCGTGTTCACACAAACGAGAGGCCCTACGCGTGCTCTTACTGTCCTAAAGCGTTTAAAGACTCAGGTACATTGTTCAAACACCAAGTAATACATTCTGGCATCAGGCCGTTTGTGTGCCCTATCTGCTCGCAAGGGTTCACGCAGAAAGTTGCTTTAAGAAAACACATCCGTTCCCACGTGACGCGGAATCGTGATAATATCTGCGAAGTGTGCGACACTCAATTCTTCTCAAAAGACGACCTATGCACACACATCGAAGATCACATCGAGCAGCACCCTAGCCTGTCGCagGTAAAAATAATCGCCACCTCATCGTCAAAGAACAAACAAGATCTGATGGTTGCTGATAAAGCCGACGACCCTCCATCGCCCAAAGAAAGAACGGAAAGCGGCGATTTGAGCGATCTGGCGACATTGTGTGACGTTGCCATTTCAACTGCTGGTGACATGGCTCGCAATTACGCATGCACCTATTGTGGCATGACGTTCCGTCGAATGAAATTCTTGGACTCCCATATGGCCACTCATCGTGATGGTTCTGTGAAGCTGAACTGCAAAAACTGCAATCGCCTGTTTCCTGACGTCAAATCGTTGCAAATCCACGAGAAACGATTCTgtcataaaacaataaaaggcGAAGGAGCTAAGAAAATCGTGACCGCGACAGGGCCTAACGCGACAGTTGTAGCTAGCATTAGTGCGGACAGTTTGGAAAATATGTCGACAAAAACAGCGGAAATCGCGAGCTCGTTGAAGAATCCGAAGCGGTATTTCTACTGCGATCGGTGCGATAAGACTTTCTCATCAAGAAATGGTTATATTATCCACCAAAGGAGTCACACGGGCGAACGACCATACCCGTGCAGatggTGTGAGAAAGCTTTTGGAGACTCCGCCACGCGGCATAAACATGAGCGAATCCATACGGGTGAGCGACCTTTCGAATGCCCCAGGTGTCCACGCGCTTTCAACCAAAGAGCCGCTCTAAGAGCCCATCAGGTAACTCACACCATAGACCGTGCCTACATTTGTAAATTCTGCCCATCGTCTTTCCCATACTTTGCTACCTTGAAACGCCATCAGCAATCCTGCCATACGACGATACCATGTCCACTATGTGCAATGTCAGCTACCGAACCCAAAAAATTGGGTGCTCACATCAAAAGCTCGCACACGTTAGCTGACAATCCGTCGTGCAGGCTTTGCGATTCGGGCCAATTTGCAGATCAGACGGAATTCGTCGAGCACATGGTTTGGCATGGAAAACAGCAGCAGACGGAACCAAGGAGTGAATACGATGCTGAGAAAGACGGTCAGTTGGAGATAATCACCATCGGAGAGCCCTCAATAAAGGAGGAAACGATTGAGCGCGAAGAAGCAATTCCGGAAGTTGATGGTGTTGAAGAGGTCTACACTGAGGATAGCTATGCTGTTTCGTACTTGGACGGCTATTCAGAAGAAGTGTACACGCAGGATGACAACAGGGAAGAAATAATCGAGCAAACAGTCGTCACTGATTTCGATATCGATAGTTCGACCATAGTGACTGTCGACGTTTCATCACCGTCGTTCAGTTGCGACGTCTGTGGGGACGAGTTTCATGAGAAAGAAGCTCTCCAAGAACACGTtcctttacatttttga
- Protein Sequence
- MAETISKMEPDSDGYTEEYVCVEEYFPLDLHEEEVVAEPLDGQEITIIQPVDNHDILHAESIIVESYDPGDPAQWTTEEVNEIVIDNNEEDTSPASAVIKLETDAVQTHVYECYKCAKRFNYKDKLFKHMKLHHARGDDVMIEREGKRIWTCTQCDKTFISRKGSIIHQRTHTGERPYSCSTCQKRFIDSSTLMKHQVIHQAVRPFTCLVCRRGFNQKVALQRHERTHGQIAPTFKCKFCPKTFLVGSSLQAHEKIHSGIKPYTCQYCPSRFHTSAAQRQHERVHTNERPYACSYCPKAFKDSGTLFKHQVIHSGIRPFVCPICSQGFTQKVALRKHIRSHVTRNRDNICEVCDTQFFSKDDLCTHIEDHIEQHPSLSQVKIIATSSSKNKQDLMVADKADDPPSPKERTESGDLSDLATLCDVAISTAGDMARNYACTYCGMTFRRMKFLDSHMATHRDGSVKLNCKNCNRLFPDVKSLQIHEKRFCHKTIKGEGAKKIVTATGPNATVVASISADSLENMSTKTAEIASSLKNPKRYFYCDRCDKTFSSRNGYIIHQRSHTGERPYPCRWCEKAFGDSATRHKHERIHTGERPFECPRCPRAFNQRAALRAHQVTHTIDRAYICKFCPSSFPYFATLKRHQQSCHTTIPCPLCAMSATEPKKLGAHIKSSHTLADNPSCRLCDSGQFADQTEFVEHMVWHGKQQQTEPRSEYDAEKDGQLEIITIGEPSIKEETIEREEAIPEVDGVEEVYTEDSYAVSYLDGYSEEVYTQDDNREEIIEQTVVTDFDIDSSTIVTVDVSSPSFSCDVCGDEFHEKEALQEHVPLHF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -