Tnot009670.1
Basic Information
- Insect
- Tupiocoris notatus
- Gene Symbol
- su(Hw)
- Assembly
- GCA_037159825.1
- Location
- JASJUZ010000258.1:262339-272272[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0017 0.18 12.7 0.9 2 20 100 118 100 120 0.93 2 13 4.2e-05 0.0044 17.8 1.8 1 23 190 213 190 213 0.98 3 13 6.3e-05 0.0066 17.2 0.3 3 23 220 240 218 240 0.96 4 13 2.2e-05 0.0023 18.7 1.1 1 19 246 264 246 267 0.95 5 13 1.9e-07 2e-05 25.1 0.3 1 23 278 300 278 300 0.97 6 13 2.1e-05 0.0022 18.7 1.0 1 23 310 332 310 332 0.98 7 13 5.1e-06 0.00054 20.6 1.8 1 23 338 360 338 360 0.96 8 13 2.2e-05 0.0023 18.7 0.8 1 23 366 388 366 388 0.98 9 13 3.2e-06 0.00033 21.3 3.0 1 23 394 416 394 416 0.94 10 13 4.4e-05 0.0046 17.7 1.0 1 23 428 451 428 451 0.95 11 13 5.1e-08 5.3e-06 26.9 0.6 1 23 457 479 457 479 0.98 12 13 4.2e-07 4.4e-05 24.1 1.6 1 23 485 507 485 507 0.98 13 13 2.4e-06 0.00025 21.7 2.0 2 23 514 536 514 536 0.96
Sequence Information
- Coding Sequence
- ATGGCTCCCAGGTCCGCGAAAGGAACCGTAGCTCCCACTCGGAGTTCGAACCGAACGAAAACGGCCGCTAGCCCAGTTAAAACCGCTCCCGCCAAAAAAGGCGTGAAGATAAAACTAGAGGTGAAAAGTCCTGTGAAGAAAAAGGTGGTCAAGAAAGATGAACAAACTACGCCTCCCAAAAGAGGGCGCCCCCCTAAGAAATCGCCTACGGTCGCTCAGAAAGGTAAAGCTGGCAGTCCTAAGAAAGtcaaaacagaagaaaaggCTCCAGAAACGGCTGAAGAAGAGTTCGCCGCAAAATGTTTCTTCTGCCCCAGAACATTCAAGACGCAGAACGGTTTGAAAATTCACGAGAGCCGGTGTAAAAGCAAGCCGTCAAATGCAATTGTCATCGTCGGTGAAGCGGTGGCATCTGGGAGCAATGGAGTGGATGATCTGGCGTCGGACCCTTTGGCGCAGTATCAAGACGAGGGAGATGGGAATGATCAGAAAATGATTGAGGCGAAAATGTCTGGACTGTGTCTCTGCTGTGGAGAAGATGAAGCAACTGCTCATTTGaccGGGAACTTCCAGTGCGCCGTTTGCCAGAAGTTCTTCCACGAAAAGGATCTACTTGAAAGGCATATCAAGATGCTTCACGATGGTCCTGAGTTGGCTTGTCCTCAGTGCGGTGCCAAGTGCCCTGACAAGGGAACACTTGCTCGTCACATGTACACTCACACAGGATTGAAGCCGTACTCTTGCCCAGTGTGCAAGCAAGAGTTCAGCCGAAAATATCACCTGGTGAGGCACAATATGCAGACAGGTTGCGACGGCAAAGCAAAGCCCGTTTTTCCGTGTCAGgtttgcGGTCGAGAATTCAACCGCAAGGACAACCTTAGGGAACATTTGAGGGCTCACGCTGGCCAAACAAAGAGAAAGAAGCTTTTCTCGTGTGACATCTGTGGTAAAGAGTTCAATGGCTGCAATCTCCTCAATGCGCATAGGAAAGTTCACCTTGGTGAGAAGCATTACCTGTGCGATTTTTGCCCGAAGAAGTTTTCAACGAGTGGTGCGATGAAGAAACACCGTCGCACACACACTGGAGAAAGGCCCTACGAATGTAGCACTTGCCAAAAACGTTTCGGCGCCAAGGAAACGTTGAACCGCCACGTGCGAATTCACACAGGCTACAAGCCTCATGCTTGTAACTATTGTGGAAAGAGGTTCATCCAATCTTCCCAGCTTCGTTCCCATCTTTTCTACCATACGGGTCAATCGGTGCTCACTCCTACCGAGACATTCATCTGTGAACTATGcggcaaaaaattcaaccgCCGGGCTCGTCTAAATGAGCACACAAAGTACGTACACTTGGGTGCAAAACCATTCGAGTGTTCTGAATGCCAGAAGACATTTATACGGAAAGAAGACCTCACGCGTCATATGATCATCCATTCTGGAGTTAAAGCCCACAAGTGCCCGATTTGCAGCAAATCTTTTGCTATGAAATCATCACTCAAGGTCCATCTGTTGACGCACACCAAGGAACCTCCAAGGTCTTGCGATGAATGCGGTCGCGCCTTCATAAGGCAAGATTGCCTCCTGCGCCACATGAGGAACAAGCATCGCGATATGCTTGAAGAAATCCGCTCCGAGGCTgctaagaaaaaattgcagcAGCAGCTTCTACAGGTCGCAGCTGAAGCAAGCTTGGTCGAAGGCATGGAAGACAGGACCGAATTGGACGACAAGGGTTTGACCGATGCTGTGCGAGAATTGTTGACGTTACTTGTCGACGAGGCAACTCTGAGAGGCTTAGGATGGCCCGAAGCTGGTGTTGAATCCCTTCTTGAAGCCGTCATCAGGCGATGCGGACACGAGCCTGCACCAGTCTCAACTCCGCACCACGACCGACTTCGTCACAATATCAAACTCCTATTCACTGTCGTCATCGACGATTCCGCCGTCAAGGCGCTCCTCAACAATCAGACTGTCGATGAAGTCATCCTTCACGTGTTGCGTCTCGCCAAGTCGTAG
- Protein Sequence
- MAPRSAKGTVAPTRSSNRTKTAASPVKTAPAKKGVKIKLEVKSPVKKKVVKKDEQTTPPKRGRPPKKSPTVAQKGKAGSPKKVKTEEKAPETAEEEFAAKCFFCPRTFKTQNGLKIHESRCKSKPSNAIVIVGEAVASGSNGVDDLASDPLAQYQDEGDGNDQKMIEAKMSGLCLCCGEDEATAHLTGNFQCAVCQKFFHEKDLLERHIKMLHDGPELACPQCGAKCPDKGTLARHMYTHTGLKPYSCPVCKQEFSRKYHLVRHNMQTGCDGKAKPVFPCQVCGREFNRKDNLREHLRAHAGQTKRKKLFSCDICGKEFNGCNLLNAHRKVHLGEKHYLCDFCPKKFSTSGAMKKHRRTHTGERPYECSTCQKRFGAKETLNRHVRIHTGYKPHACNYCGKRFIQSSQLRSHLFYHTGQSVLTPTETFICELCGKKFNRRARLNEHTKYVHLGAKPFECSECQKTFIRKEDLTRHMIIHSGVKAHKCPICSKSFAMKSSLKVHLLTHTKEPPRSCDECGRAFIRQDCLLRHMRNKHRDMLEEIRSEAAKKKLQQQLLQVAAEASLVEGMEDRTELDDKGLTDAVRELLTLLVDEATLRGLGWPEAGVESLLEAVIRRCGHEPAPVSTPHHDRLRHNIKLLFTVVIDDSAVKALLNNQTVDEVILHVLRLAKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -