Tnot000875.1
Basic Information
- Insect
- Tupiocoris notatus
- Gene Symbol
- bab1
- Assembly
- GCA_037159825.1
- Location
- JASJUZ010000017.1:734641-742923[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.9e-16 3.4e-13 49.4 0.0 1 43 55 98 55 100 0.95 2 2 7.7 9e+03 -3.1 0.5 6 15 290 299 290 300 0.89
Sequence Information
- Coding Sequence
- ATGCTGGAATCGTCACACGCCTGGTTGGGAGCCTCAACCTCATCACTTGCCGCAGACAGCTACCAGTACCAACTGCAATCCATGTGGCAGAAGTGCTGGAACACAAACCAAAGCCTCGTACACAACCTGAGATTCCGCGAGCGAGGACCGTTGAAAAGCTGGCGCCCTGAAACGATGGCCGAAGCGATTCTGAGCGTCCTGAAAGAAGGGCTAAGTTTGTCACAAGCGGCGAGGAAATACGACATTCCGTATCCGACGTTTGTCTTGTACGCAAATCGAGTGCACAACATGCTTGGACCATCTGCCGACGGAGGCTCTGATTTGAGACCCAAAGGACGAGGTCGGCCCCAGCGGATCCTCCTGGGAATATGGCCCGAGGACCATATTCGTGGGGTCATACGAGCTGTCGTTTTCCGAGACCCGCAACACATGAAGGATGAAAATCTCAACGTCGGCTACCACCATAGACTTCAGAAGCCTCCTCTCGTCGGGCAAGATGTCGTCCACAATTACAGTAACCCCGGTGGCGGCAGTGGAGGTGGCAGCGGACCTGGAAGTATAGCTAGCAGTGATTCAGCGGCTGGAGGAGTGTCACCTAGTTCGGCTGCAGCTGCAGTTGTCGCTGTGGCTCAAAATTTACGCCAGCAAATGCTTGCAGCTGCTGCTCATCATCACAACCAGCAGCAGCAACAGcagcagcaacaacaacagcagcaacagcaacaacaacagcagcagcagcatCAAATGCAAATGCACCATTCTTCTCATCACCACCTTCCTCAGatgAACCATGGTCAGCATCATGGTGGAAACCGCCATACGAATCAACCAATGCCGCCGGCAGCTGGGTTCGGCTTCTTGGCAGCCGCAGCTGCTGCTCACTGCGCTAATGGAAATAACATTGTCATGCATTCACCTAGTCCAGTGAATAGCTCGCCTAGATCTTCTCCACTCACACAACCCAACAACAACATGGAGATGCCAATGGCTCTTGGATTCAAACCCATTGTAAACGACATTACCTCATCCAGGAACGAATCCATGTTCCAAGATGAAATTGAAGACTTAGTAAAAAGACCGCAGCCCAGCGAGACCCCGGGTAAAATGAAACCACCATCAATGCCGTACAGTCCGATGCCTAACGATCTTTCCATGAAAGCAGAACACATTTTCCAGGAGGAAATGGAAAACATGATGAAACGATCGCCCGTTTCAGAAGCAGCCAAAGTCaagGTTGGCATGAGCGTCAGCAACATGCCTTACAAAGGACCCAGCGACGGTAGTTATCTGAACACAAGGCAGGAAGCATTGTTTCAAGACGACATCGAAGAGCTGGTGAAAAGTCCACCGCAAACTCAGCAAAAAGAACCCATCCATATGCCCGTTGATCAGCGCACCGAGTAG
- Protein Sequence
- MLESSHAWLGASTSSLAADSYQYQLQSMWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAILSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGSDLRPKGRGRPQRILLGIWPEDHIRGVIRAVVFRDPQHMKDENLNVGYHHRLQKPPLVGQDVVHNYSNPGGGSGGGSGPGSIASSDSAAGGVSPSSAAAAVVAVAQNLRQQMLAAAAHHHNQQQQQQQQQQQQQQQQQQQQQHQMQMHHSSHHHLPQMNHGQHHGGNRHTNQPMPPAAGFGFLAAAAAAHCANGNNIVMHSPSPVNSSPRSSPLTQPNNNMEMPMALGFKPIVNDITSSRNESMFQDEIEDLVKRPQPSETPGKMKPPSMPYSPMPNDLSMKAEHIFQEEMENMMKRSPVSEAAKVKVGMSVSNMPYKGPSDGSYLNTRQEALFQDDIEELVKSPPQTQQKEPIHMPVDQRTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01500270;
- 90% Identity
- iTF_01500270;
- 80% Identity
- -