Tnot002545.1
Basic Information
- Insect
- Tupiocoris notatus
- Gene Symbol
- bab2
- Assembly
- GCA_037159825.1
- Location
- JASJUZ010000059.1:399625-408594[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.4e-13 2.8e-10 40.1 0.0 1 39 405 444 405 448 0.90 2 4 1.9e-12 2.2e-09 37.2 0.0 1 39 459 497 459 500 0.95 3 4 2.4e-17 2.7e-14 52.9 0.0 2 45 515 559 514 559 0.98 4 4 3.2e-19 3.8e-16 58.9 0.1 1 43 566 609 566 610 0.96
Sequence Information
- Coding Sequence
- ATGTTTTATGGATACCATTACAGCGAAGGGGGCGAAGAGGGGGAGGATATGGCATCGCAGCATTACTGTCTTCGTTGGAACAATTACCAGTCGAACATGACGTCGGTTTTTCACCATTTGTTGCGAACGCAGTCATTTGTCGACGTCACGCTCGCATGCAACGACCAATCGCTCAAAGCTCACAAGGTCGTCCTCTCTGCTTGTTCCTCCTACTTCCAAAAACTGCTCCTCGAGAACCCTTGCAAACATCCGACGATCATCATGCCTCAAGACGTGTGCTTTACCGATCTcaaatttattatcgaattcGTCTACAAAGGTGAAATCGATGTGTCTCAAGCCCAGCTGCAAAGTCTCCTCAAAACGGCCGACCAGTTGAAGATCAAAGGTCTTTGTGAAGTCCCCGAAGGTAAATCTGGCGCTGAAGTGACTCCTTTGTCTCCATCTCCTGTAAGAAAAAGCTGCCTGTCCGTCAAAAAGCGGAGGCTGGCCTCGGTTAAACGGCGACATCTGTACAGAGAGCGATTGATGCAGCAAACCGGCGTTCGTCGCGTAAGTGACCGCATTATCACGGTTGGCGATATCAGTAGCCGTGTAATGCTCAAGAAGGACGTCGAAGCTAGCTGTATCAATGTTGGCACGGGCACTGAAGAAGTGAAAGAAATGCCTGTTGTAGTTGTCAACCAGAGCGCATCTGGTATCAATAACGGCCTCATGATCGCCAGCCCTCAACCTTTGCAAGCACTCCAGCCAGCAACGCCTCATTCTTTGCAGCCTACTCCGGTTGCTAACGAAGTCAACCAGTCGACGCAAGTTGAAGTGGAAATGACCGTTGAACCTCCTGCACCCTCGGCCACTCTTGTTTCAACGACTACTATGGACATCCAAACTACCGAGCCAACTACGACTCACAGAGATATTGCTATTGACTCCAGCGATTTGGATGCTGAAGAAAACGACGTCAAAGTGAAGTTTGAAACGTTGAGATCTATGGATCGTGTTGACCATATGGAAATTGAAACTCACATGACGAACGGGGCAGTGCAGACGAATGTCAACGATGATCCATCCATGCACACGATGATGATAACTCCTGAGCTGCTTGGCCTTATACCATCCTCTAACTCAGAGAATGGAGACATGGATCACGGCAAAGCATCGCTGGGTGGGAACATGGCATTGTCAACTTTGGCATCTGGTGGCAAAGCTTGGACCAAAGAGGATATGGAAGCTGCATTGGATGCACTTAGGAAGCAGACCATGTCGTTAAGCAAAGCATCTGCTCACTACGGCATCCCTTCGACCACATTATGGCAAAGGGCTCATCGGTTGGGCATTGACACGCCGAAAAAGGACGGCCCAGCCAAGTCTTGGACTGAAGATAATTTGAATACGGCTCTTGACGCTCTTCGGCAAGGATCTATTTCAGCCAACAAGGCCAGCAAAGcatttgGCATCCCAAGCAGCACGTTGTATAAAATAGCTCGAAGGGAAGGCATCCGACTTGCAGCACCGTTCAATGCAGCACCAACTTCATGGGTTCCTGAAGACCTAGAGCGAGCCCTCGAGGCGATCAGAACCGGCCAATTTACTGTACAAAGAGCGGCCACCGAGTATGGAATTCCATCGGGGACACTTTACGGACGTTGTAAGCGCGAAGGGATTGAATTGTCAAGGAATAATCCAACTCCATGGTCGGAAGATGCGATGATGGAAGCTCTCGAAGCTGTCAGGGTTGGCCAAATGAGTATCAACCAGGCTGCCATTCATTACAATTTGCCCTACTCGTCGCTCTACGGGCGGTTCAAACGTGTCAAATACGAAGCCGAAGGCCTCTCTGGAAGCGAGACGGAAACAAGCGAGCAGCACGGTCCTGTCATTCAACAGCAAACAACCCCGACGCATCCGTCACCTTCAGCACAACAGCCGACACACCCGGCTGCAACGCATGTACCTCCTCCGTCTCATCCTCCTCAGCCGACAACGCATTCCCAACCGCAGATTATGCTAGTGCAATATCAGCAGCCTTTGCAGATGTATCAGTCGGCTACATGA
- Protein Sequence
- MFYGYHYSEGGEEGEDMASQHYCLRWNNYQSNMTSVFHHLLRTQSFVDVTLACNDQSLKAHKVVLSACSSYFQKLLLENPCKHPTIIMPQDVCFTDLKFIIEFVYKGEIDVSQAQLQSLLKTADQLKIKGLCEVPEGKSGAEVTPLSPSPVRKSCLSVKKRRLASVKRRHLYRERLMQQTGVRRVSDRIITVGDISSRVMLKKDVEASCINVGTGTEEVKEMPVVVVNQSASGINNGLMIASPQPLQALQPATPHSLQPTPVANEVNQSTQVEVEMTVEPPAPSATLVSTTTMDIQTTEPTTTHRDIAIDSSDLDAEENDVKVKFETLRSMDRVDHMEIETHMTNGAVQTNVNDDPSMHTMMITPELLGLIPSSNSENGDMDHGKASLGGNMALSTLASGGKAWTKEDMEAALDALRKQTMSLSKASAHYGIPSTTLWQRAHRLGIDTPKKDGPAKSWTEDNLNTALDALRQGSISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTSWVPEDLERALEAIRTGQFTVQRAATEYGIPSGTLYGRCKREGIELSRNNPTPWSEDAMMEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRVKYEAEGLSGSETETSEQHGPVIQQQTTPTHPSPSAQQPTHPAATHVPPPSHPPQPTTHSQPQIMLVQYQQPLQMYQSAT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00930489;
- 90% Identity
- iTF_01500490;
- 80% Identity
- iTF_01500490;