Tsal019211.1
Basic Information
- Insect
- Tuberolachnus salignus
- Gene Symbol
- -
- Assembly
- GCA_956483605.1
- Location
- OY101437.1:20286866-20303666[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 9 9.7e+02 0.9 0.5 3 11 17 26 16 29 0.85 2 13 5e-06 0.00055 20.6 1.2 1 23 73 96 73 96 0.95 3 13 0.22 23 6.0 1.4 2 21 117 139 116 140 0.81 4 13 1.3e-06 0.00014 22.5 0.8 1 23 148 171 148 171 0.97 5 13 6 6.5e+02 1.5 2.2 3 21 197 219 195 220 0.67 6 13 1.1e-06 0.00012 22.7 0.3 1 23 228 251 228 251 0.94 7 13 1.9 2.1e+02 3.0 0.7 11 21 395 405 382 406 0.85 8 13 0.5 54 4.9 1.4 1 12 414 425 414 431 0.85 9 13 7.6 8.2e+02 1.2 1.3 3 21 438 460 436 461 0.70 10 13 1.1e-05 0.0012 19.5 0.8 1 23 469 492 469 492 0.95 11 13 4.1 4.4e+02 2.0 1.5 3 20 517 538 515 539 0.66 12 13 1.1e-06 0.00011 22.7 0.9 1 23 548 571 548 571 0.96 13 13 6.9e-07 7.5e-05 23.3 0.7 1 23 617 640 617 640 0.96
Sequence Information
- Coding Sequence
- atgttactgcAGCTCTTGAACGAGGCCGCTGCCTACGACCCGGCATATTGTCCGAAAAAATGCGGCCGGTTTTACAGAGGTCTTCGGGAGTGTGATGTGAAAACGTTACCCGGCGTAGTCGTGTGTCCGAACGCATGCGGCCGTCACTATAGCGGCTTGTTttccaaaaacaatttaaaacaacatttgaaACTGGAGTGCGGCGTGCCGCCCATGTTCTCGTGCGCAATATGTTCCAGAAGATTTAGTAGAAACGAAAGTTTAAAACGGCATTTGTTCATGGTGCACAAGACGCGGAAAAATCACGATCTGATGAAATTAGTACTGTTGTCCGAATGCGACCCGGTCGTGTGCCCGAACTGCGGTCGTCATTATAGCGGGCCGGCGCGTAAAGGCAATttgaaaaaacatttgaaactgGAGTGCGGCGTGGCGCCAATGTTTTCGTGCGCAATATGTTCCAGAAAGTTTAGTCGAAACGAAAGTCTAAAACGGCATTTGATCACCGTGCACAAGACGCTCGACAATCACGATATGATGGATATGATACCGATCATCATTATGGACATGTTGCCCGACCCGGTCATGTGCACCAACGATTGCGGCCGTTACTATAGCGGACCGAAGCGGAAATACAGTctgaaaaaacatttgaaactcGAGTGCGGCGTGCCGCCCATGTTCCCGTGCACAATATGTTCGAAACGATTTACTAGAAACGAAGGCTTAAAACGGCACATAGGAATAGTGCACAAAACAGAGTTTTATACGACCGGGGACGGATCGAACCGCCGTGGATTCGGTCTGTCGGCAAAGGGAAGCCGAGCGTTGCCCGACCCGATCGCGTGCCCGAACAATTGCGGTCGTTTTTACAGTGGAATTCAGCGAAAAAATACTCTGAAACAACACTTGAAACTGGAGTGCGGCGTTGAGCCAATGTTCTCGTGCAAAGTATGTTTATTGGTGAGTTATCAGCAATTGCCTGACCCGGTCGAGTGTCCGAATAATTGCGGTCGTCTTTACAGCGGACTTCAACGAAGAAATACACTGACACAACATTTGAAACTGGAGTGCGGCGTTGATCCGAAATTCTCGTGCACCATATGTCTTCGGGGACGTTTTCCAAAATCACCCGACCCGATCATGTGCCCGAATGCTTGCGGCCACCGTTATAGCGGAGTGAGGAGAAAAGGCAATctgaaaaaacatttgaaacaaGAATGCGGCGTGGCGCCAATGTTCAAGTGCGCAATATGTTCCAGAAGGTTTAGTTTTTTTTCGAGACATCAGCAATTGCCCGACCCTGTCTCATGTCCGAACAATTGCGGTCGTTTTTACAGAGGAGGTTGGCGAAAATATACTTTAAAACAACACATAAAACTGGAGTGCGGCGTTGAGCCAATGTTCATGTGCACAATATGTTCGAAAAAATTTACCAGAAACGAGAGATTGAGAAATCATTTGGCTATAGTGCACAAAACGTTTAACAATTGGTTGTCGGACTATCgtcaaacggcggcggcggcacggcCCGCCGAACTGGTCGTGTGCCCGAACGGCTGCGGCCGTCACTACGTCGGTGCATATtccaaatacaatttgaaaaaacatTTGACGTTCGAGTGCGGCGTGGAGCCCATGTTCTCGTGCCCGGTATGCTTAAGACGGTTTACTAGAAAAGAGGGCTTGAAACGGCACATGAAATTGGTGCACCCCGTATATGGGAATATGCGAAAATTACCGGACCCGGTCATGTGCCCAAACGTTTGCGGTAGTTCTTATACCGGACCGCGGAGGAAATATTCTTTAAACCAACATCTGAAATTCGAATGCGGTGTGGAGCCCATGTTCAAGTGTGCAATATGTTCGAAACGATTTTCAAGAAACGCGAATTTGAAATCGCATTTGGGAACGGTGCACAAAACATTGTATAACTGCTTGCCGTCGCATTATCGGCAGACGTGA
- Protein Sequence
- MLLQLLNEAAAYDPAYCPKKCGRFYRGLRECDVKTLPGVVVCPNACGRHYSGLFSKNNLKQHLKLECGVPPMFSCAICSRRFSRNESLKRHLFMVHKTRKNHDLMKLVLLSECDPVVCPNCGRHYSGPARKGNLKKHLKLECGVAPMFSCAICSRKFSRNESLKRHLITVHKTLDNHDMMDMIPIIIMDMLPDPVMCTNDCGRYYSGPKRKYSLKKHLKLECGVPPMFPCTICSKRFTRNEGLKRHIGIVHKTEFYTTGDGSNRRGFGLSAKGSRALPDPIACPNNCGRFYSGIQRKNTLKQHLKLECGVEPMFSCKVCLLVSYQQLPDPVECPNNCGRLYSGLQRRNTLTQHLKLECGVDPKFSCTICLRGRFPKSPDPIMCPNACGHRYSGVRRKGNLKKHLKQECGVAPMFKCAICSRRFSFFSRHQQLPDPVSCPNNCGRFYRGGWRKYTLKQHIKLECGVEPMFMCTICSKKFTRNERLRNHLAIVHKTFNNWLSDYRQTAAAARPAELVVCPNGCGRHYVGAYSKYNLKKHLTFECGVEPMFSCPVCLRRFTRKEGLKRHMKLVHPVYGNMRKLPDPVMCPNVCGSSYTGPRRKYSLNQHLKFECGVEPMFKCAICSKRFSRNANLKSHLGTVHKTLYNCLPSHYRQT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -