Basic Information

Insect: Tuberolachnus salignus
Gene Symbol: Bcl11a
Assembly: GCA_956483605.1
Location: OY101430.1:20032159-20032998[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.0013 0.14 13.1 1.3 2 23 75 96 74 96 0.97

2 7 6.6e-06 0.00071 20.2 0.7 1 23 102 124 102 124 0.97

3 7 0.0017 0.19 12.6 0.1 1 23 131 153 131 153 0.95

4 7 5.8e-06 0.00063 20.4 4.1 1 23 164 186 164 186 0.96

5 7 2.1e-06 0.00023 21.8 2.1 1 23 192 214 192 214 0.98

6 7 8.3e-06 0.0009 19.9 1.0 1 23 226 248 226 248 0.98

7 7 1.4e-06 0.00015 22.4 0.4 1 23 256 278 256 278 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.0013	0.14	13.1	1.3	2	23	75	96	74	96	0.97
2	7	6.6e-06	0.00071	20.2	0.7	1	23	102	124	102	124	0.97
3	7	0.0017	0.19	12.6	0.1	1	23	131	153	131	153	0.95
4	7	5.8e-06	0.00063	20.4	4.1	1	23	164	186	164	186	0.96
5	7	2.1e-06	0.00023	21.8	2.1	1	23	192	214	192	214	0.98
6	7	8.3e-06	0.0009	19.9	1.0	1	23	226	248	226	248	0.98
7	7	1.4e-06	0.00015	22.4	0.4	1	23	256	278	256	278	0.98

Sequence Information

Coding Sequence: ATGATGGGCGATGTGACTGCTCAAAGTCCTCCTACTGATGATTTAAACAACTCTGGCTCTTCTTCATCTTCTGATTCTGATTCTGACGGCGAATCAAGCAGTTCTTGTACTAGTTCTAGTTCATCTTCATGTTCTGAAACTCCCAACAAATTGTACAATAGTCCTAATCTTCCTGTTTGCTATGAAAACACTCCACAGTCAAATGGTCAATTAGATTGGATTGTTTGTCAGCTTTGCCTTCATAAGGTGAAAACAccattacaattaaaacaacacATGCGTATGCACACTGAACTTAAAATACATCGCTGTGCCATATGTAACAAAACCTTTGAACAAGCCACCCGTTTAGAAAAACATATAGCTATACATTGTGGCACAGATTCCCGATTTGAATGTGCACTCTGTGGCAAAGTGTATAAATTAAGAACTCAAATTGTTAGTCATATAGCAGctcacaaaaaacaaaatgctgGACGCCGTATATCTTATACTTGTCATTTGTGCACAAAAAAATTTTCTAATAAGTCAAAACTAAAGGAACATGTATCAGGTCATGAAAATGGAACATTGCATTCGTGTGATGTCTGTGGACGAACTTTTAAACTAAATTCATATCTTGTTGTACACAAAAGAACACATGAAATGAATGTGTCCTATACAGGAGACAAACCATTCACATGTACATTGTGTAACAAGTCATTTTTGAGCAAAAGTAACCTAGACCTACACATGTTAGTGcacaattatgttaaaaaagcATCATATAGCTGTGACATATGTGGAAAAATATTTATGcgcaaatataattatgatgCTCATGTTAAAATACATCAATAG
Protein Sequence: MMGDVTAQSPPTDDLNNSGSSSSSDSDSDGESSSSCTSSSSSSCSETPNKLYNSPNLPVCYENTPQSNGQLDWIVCQLCLHKVKTPLQLKQHMRMHTELKIHRCAICNKTFEQATRLEKHIAIHCGTDSRFECALCGKVYKLRTQIVSHIAAHKKQNAGRRISYTCHLCTKKFSNKSKLKEHVSGHENGTLHSCDVCGRTFKLNSYLVVHKRTHEMNVSYTGDKPFTCTLCNKSFLSKSNLDLHMLVHNYVKKASYSCDICGKIFMRKYNYDAHVKIHQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00340829;
90% Identity: iTF_00340829;
80% Identity: -