Tsal008524.1
Basic Information
- Insect
- Tuberolachnus salignus
- Gene Symbol
- -
- Assembly
- GCA_956483605.1
- Location
- OY101432.1:16606257-16611064[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00071 0.077 13.8 4.5 1 23 242 264 242 264 0.97 2 11 1.9e-05 0.0021 18.8 2.5 1 23 270 292 270 292 0.98 3 11 0.00018 0.019 15.7 0.5 1 23 298 321 298 321 0.97 4 11 0.078 8.5 7.4 3.4 1 21 327 347 327 349 0.95 5 11 0.00011 0.012 16.4 1.9 1 23 355 377 355 377 0.99 6 11 0.00015 0.016 16.0 1.4 1 23 383 405 383 405 0.98 7 11 0.00052 0.056 14.3 2.9 1 23 412 435 412 435 0.97 8 11 0.0011 0.12 13.3 2.4 2 23 442 463 441 463 0.96 9 11 0.0005 0.054 14.3 1.3 1 23 469 491 469 491 0.98 10 11 0.00024 0.026 15.3 5.5 1 23 497 520 497 520 0.95 11 11 7.1e-06 0.00077 20.1 5.9 1 23 534 556 534 556 0.98
Sequence Information
- Coding Sequence
- ATGACTATAGAtggaaattatgtaaaaatggaGGAAAATTCCACAGAAACTGAAAATATTAACGATATACAAAATTACTTGGATTCGTTTAATAAAGAAATTGAAGGAAATGAAATAACACAAGCGGTAACTGATAGTGAATCAGTAGATCATGGGTATTTTATTGATCAAAAtgtccaatattattatcaaacaactACAAATGATGGACAAATGGTTATGGTGGgaggactTTCCGAACAAGATGCACAAATTATGGCTGACACGAATGAtagcaatataaataatattccccaAATTAATCTACCTGATGAAGACAAACTAAAAAAAGATATGTTACAAatTGTTTCTATGGACGAAGGCACTTATCAAACAGTTACTCTTGTTCAAGCtgataatgaagataataattatgttcttTATGTGGTGAAACAACCAAATGATAAAGATGATGAATCTTCCAGTGTTGCTTTGGAAATATCAAATGATGATCCAGATGATCTAGATGATCCAGATGATCCTGATGATCCAGATGATCCAGATGATCCTGATGATCCTGATGATCCTGATACTAGTAATGTGTATGATTTCAATGATGGCGAAGAACCAAATCGGTCATTAAATTCCTCCAGTGTTATTGTAGAACCTAACGAAGAAGATGAAAGTTCTGTAATTACTAAATTAGCATTGAAAAAGTCACAGACACAACCTGTATCTCAATTGCATATGTGTAACTATTGTAATTATACTACTGGGAAAagatatTTGTTGTCTCGTCATATGAAATCACATTCAAAAGAACGACCACATAAATGCACTGTTTGTGAACGGGGTTTCAAAACTCTTACTTCATTACAAAATCACGTTAACACTCATACAGGAACAAAACCCTATCAGTGTCGTAGTTGCCCAAGTGCTTTTACTACATCAGgggAACTTGTAAGACATGTTCGATATAAGCACACTCATGAAAAACCGCATAAATGTACAGTTTGTGATTATGCTAGTGTAGAACTTAGTAAAATGAGAAATCACATGAGATGTCATACTGGTGAACGGCCTTaccaatgtCCTCATTGTACTTATGCAAGTCCGGATACATTCAAATTAAAACGACATTTACGTATTCATACAGGAGAAAAACCATATGAATGTGACATTTGCTTTTCTAGGTTTACACAATCCAACAGTTTAAAAACACACAGACTGATACACAGtgGAGAAAAGCCAGTATTTAAATGTGAGCATTGTCCAGCAACTTGTGGTCGAAAAACTGATTTGCGTATACATGTACAAAAACTTCATACTTCAGATAAACCTATTAAGTGCAAACGATGTGGTGAAGCATTTCCTGATCGTTATCAGTATAAGGTACATTGCAAAACACatgaaggggaaaaatgttataaatgtgAGCTGTGTTCTTATGCTTCCATGTCTCAGCGTCATCTCGAAACTCACATGTTAATACACACAGATGAAAAACCATTCCATTGCAAACAATGTGAACaaTCTTTtagacaaaaacaattattgcgtCGCCATTACAATTTGTATCACAACCCATCATATATTCCACCTGCTCCACACAAAAAAGCACATCAATGTAATTCATGTAAAAGATCATTTAGACATAAGGGAAATTTATTAAGACATATGGAAATGCATATGCAAGAATCAACGGGAAAGGATCAAAGTACAACAATGGAACAACAATTAGACTATACGGATTCAGCTAATGAGGATGAATCGGAAGAAGATACAAGCATTCCGTCAAATGAAAGCGAAACTGTAGCAGTAGAAGGCGAAGATGGTCAACGATACGTTGTACTTGAAGTAATCCAACTTGACGATCAAGATCAGTTAGACAATTATTCATCTTCAACCGTGTCACTGCAACAAGCTAATcaatcttcACCAAGTCAAAAGGAccttacaattttaaaaccagCATCTTTGTCTACAACCCTTAGAGAAGATTGTAATGATGGCGTTGCAAATTGTTTTGgttttgatgatgatgatgatgaagaaACTACACATATGAGTGACTAA
- Protein Sequence
- MTIDGNYVKMEENSTETENINDIQNYLDSFNKEIEGNEITQAVTDSESVDHGYFIDQNVQYYYQTTTNDGQMVMVGGLSEQDAQIMADTNDSNINNIPQINLPDEDKLKKDMLQIVSMDEGTYQTVTLVQADNEDNNYVLYVVKQPNDKDDESSSVALEISNDDPDDLDDPDDPDDPDDPDDPDDPDDPDTSNVYDFNDGEEPNRSLNSSSVIVEPNEEDESSVITKLALKKSQTQPVSQLHMCNYCNYTTGKRYLLSRHMKSHSKERPHKCTVCERGFKTLTSLQNHVNTHTGTKPYQCRSCPSAFTTSGELVRHVRYKHTHEKPHKCTVCDYASVELSKMRNHMRCHTGERPYQCPHCTYASPDTFKLKRHLRIHTGEKPYECDICFSRFTQSNSLKTHRLIHSGEKPVFKCEHCPATCGRKTDLRIHVQKLHTSDKPIKCKRCGEAFPDRYQYKVHCKTHEGEKCYKCELCSYASMSQRHLETHMLIHTDEKPFHCKQCEQSFRQKQLLRRHYNLYHNPSYIPPAPHKKAHQCNSCKRSFRHKGNLLRHMEMHMQESTGKDQSTTMEQQLDYTDSANEDESEEDTSIPSNESETVAVEGEDGQRYVVLEVIQLDDQDQLDNYSSSTVSLQQANQSSPSQKDLTILKPASLSTTLREDCNDGVANCFGFDDDDDEETTHMSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -