Tsal002786.1
Basic Information
- Insect
- Tuberolachnus salignus
- Gene Symbol
- -
- Assembly
- GCA_956483605.1
- Location
- OY101429.1:53691832-53694420[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 8.7e-05 0.0094 16.7 1.5 3 23 7 27 5 27 0.96 2 12 0.048 5.2 8.1 0.8 3 23 32 53 31 53 0.93 3 12 0.00011 0.012 16.3 3.3 1 23 62 85 62 85 0.98 4 12 0.00011 0.011 16.5 0.1 3 23 92 114 90 114 0.92 5 12 1.2e-06 0.00013 22.6 1.3 1 23 118 140 118 140 0.98 6 12 0.0075 0.82 10.6 2.4 1 21 143 163 143 164 0.95 7 12 0.00024 0.026 15.3 3.1 1 23 187 211 187 211 0.92 8 12 1.4e-05 0.0016 19.2 3.3 1 23 220 243 220 243 0.96 9 12 3.3e-05 0.0036 18.0 2.7 1 23 250 272 250 272 0.97 10 12 0.00048 0.052 14.4 5.8 1 23 278 301 278 301 0.94 11 12 0.00048 0.052 14.4 0.9 1 23 307 329 307 329 0.98 12 12 0.097 11 7.1 3.8 5 23 338 357 335 357 0.91
Sequence Information
- Coding Sequence
- ATGCCTGAACACTACGGCTGTGATCTTTGCGACAAAACATTTACAAACCGCAGACATTACGAGCTGCACGTCAACGGTCATCTTCGGAACAATTGTCGTGTTTGCAGTTTGCCCTGCAACAGCCGTAAGACACTGGTTGCGCATATGTCTGCAGTTCATGGATCCAAATTGGAATCGGTTACTTTCGAGTGTAAATACTGTATGAAAACATTTGTTCAAAAACGTTCGTTGTACTCCCATTACAAGACCATCCACAAAGACTCTGGCACTATTTGTCTTGATTGTGGACAGCCATTCAACAGTAAACAAGATCTTGTTGACCACATTAAAACCGTTAAACATGGCGATGGCTTTGTGTGCGATAAGTGTGGTGAAGTATTCAGTCGAAatcaacaatataaattacacttaAAGAGGCACGATGCTTACTGTTGTTTCATTTGTAATGCGCAATTtgcaaattcaaaaaaaatgaacaaacatataaaacaaTGTGTTTCAATTCTACCGATGGATCATTtattgaatagtaaaaaaacgaCTACAAcagGGGTTATTTATGAATGCATTGAGTGCAAAAAGACGtttgagaagaaaaaatattataaacgccaTATGAAAACATCTGTTCATTTAgtcaataaaatcaataatccaTTTTATTGTGCCCATTGTCCTAAagtattctattataaatttaacttgtCATCACACATGAAACAAGTACATTTTaaacaacacaataattatgtttgtaaCTTGTGCGGTCGTAGCTTTCAGTACAGGAACAACTATAAAAGACATAAAGATTCTCATATGCAAGTTAGAAACTTTGTATGCGAACATTGTGGTGCTTGTTTCTATCGTAAACATGCTCTACACGATCATCAAATCGCCACCCATAATGACAAAAAGAATTTTGTGTGCAACGAGTGTggtgacaattttaaattaaaatctatattaaCAAGACACATGAAAAATCATTCcgaaactaaaaaatatgtatgccattgtaaacgtttatttaaattcgCATCGAATTTACACCGTCATCAAGTCAACATCCATAATCAAGTATACAGCAATTCATTTAAGATCAAGCGTTTTGTGGAAGACAATAGCCGTTCGTCTCCAATAACAGTCATGAATGAAGAAAAGAAAGTTCAAAGGTTGATGCAAAATATGATAAGTCCCCTCCGTCCAGAAGACACCGTATCGTATTCTATGATGTCGTATCCTGATAACTTGGATTTGAGCAGTGTCGATATTGCAGAGAGTGTGCTTCAAGTAGCGTCAACATCAaactacaaaatagaatgcgaAGAAAACTCGTGTTTCCCCGGAATTCATCCTCCAATTGAGACATCTCTTGTGTGCAGCTTAAATGACAGTGAAGATTTGTCTCCCAATTCTTCACAGCAATATTTATCAGATTATGTCATACCCCATCAGTTTCCATTTCTTAATATTTGA
- Protein Sequence
- MPEHYGCDLCDKTFTNRRHYELHVNGHLRNNCRVCSLPCNSRKTLVAHMSAVHGSKLESVTFECKYCMKTFVQKRSLYSHYKTIHKDSGTICLDCGQPFNSKQDLVDHIKTVKHGDGFVCDKCGEVFSRNQQYKLHLKRHDAYCCFICNAQFANSKKMNKHIKQCVSILPMDHLLNSKKTTTTGVIYECIECKKTFEKKKYYKRHMKTSVHLVNKINNPFYCAHCPKVFYYKFNLSSHMKQVHFKQHNNYVCNLCGRSFQYRNNYKRHKDSHMQVRNFVCEHCGACFYRKHALHDHQIATHNDKKNFVCNECGDNFKLKSILTRHMKNHSETKKYVCHCKRLFKFASNLHRHQVNIHNQVYSNSFKIKRFVEDNSRSSPITVMNEEKKVQRLMQNMISPLRPEDTVSYSMMSYPDNLDLSSVDIAESVLQVASTSNYKIECEENSCFPGIHPPIETSLVCSLNDSEDLSPNSSQQYLSDYVIPHQFPFLNI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01434347;
- 90% Identity
- -
- 80% Identity
- -