Tsal001763.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tuberolachnus salignus
Gene Symbol
-
Assembly
GCA_956483605.1
Location
OY101429.1:32241966-32244101[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 8.2e-08 8.9e-06 26.2 1.2 1 23 147 169 147 169 0.99
2 9 5e-07 5.4e-05 23.8 5.0 1 23 175 197 175 197 0.99
3 9 0.14 15 6.6 4.5 1 23 203 225 203 226 0.95
4 9 2.1e-05 0.0022 18.7 0.3 2 23 235 256 234 256 0.97
5 9 0.0035 0.38 11.7 9.2 1 23 262 284 262 284 0.98
6 9 8.4e-06 0.00091 19.9 1.2 2 23 294 315 293 315 0.97
7 9 1.1e-05 0.0012 19.5 6.0 1 23 321 343 321 343 0.99
8 9 3.4e-06 0.00037 21.1 0.2 2 23 353 374 352 374 0.97
9 9 2e-06 0.00022 21.8 6.9 1 23 380 402 380 402 0.99

Sequence Information

Coding Sequence
ATGGAAACCGAACATCCGGTACCGTCGACACAGGTCGGTGCGACGGAGAACCACAAACAATCTGAACGTTTCCCAATCAGGGGACCTCTGATAAACAATATCAGtaacATGCCTCCATTTGGTCTACCAGCCAGTGCTTATGAATTCAATCCAAACGCTCggttaactattaaatttgataGAGAAATGTTTAACAGTAGTCTGTTTGATAGTGAAATAGAAATTAGTCCTGCTGGTATTGGGAACAACATGGCATTTCGGTTTAATAGAAATGATTTATTTAGACCTACTCAttttgattttagtaATAGAGGTAATATGTTGTTAAATGGACACTTCACACCGTCCAATTTGGAAGTAGGTGAAAATTTAGATACTAAAAGGCAACAACATTTAAATGAGTTCGGGATGAAAAAACCCGAAATGAAATCAAAACCATTCAAATGTGATGTTTGTAAGAAATCGTTTTCCAGTTCCGGAGGTTTGACAGTTCATTACAGAACACACACGGGTAACAAACCTTTTAAATGTGATTTATGTAGTAAAACCTTTTCAAATTCAAGTCATTACAATTACCACATGCGTGTACATTCAGGAGATAAACCATTTAAATGTCAAGTGTGCAACAAGGAATATTCTTGTGCTAACGGAATTTTATATCACCAGAGAACACATCACTTTTCGCAAGACACAAAACCACTGAAGTGTGATGTTTGCAACAAATTGTTTTCAAGTCTTGGTGGTTTGACTGTTCACTATCGCTCTCACACTGGCGACCGACCATTTAAATGTGAAGTATGCTTTAAGACATTTACCAGTTCTAGTCACTGCAAGTATCACCAAAAATCTCATCTGGAAAcacctacaaaaaaaactttaaaatgtgATGTATGTCATAAATTGTTCTCCAGCTCTGGTGGTCTACAAGTTCACTATAGGATGCATACTGGTGACCGACCGTTTAAGTGTGAAGTTTGCCTTAAATCGTTTACTAGTTCCAGTCATTTTAAGTACCATCAAAAATCACATGTGGtttccaatgaaaaaaaaacattaaaatgtgaTATATGCGATAAGTTATTTTCAAGTTCGGGTGGTCTAGTGGTGCATTATCGTACACATACCGGCCACAGACCGTTTAAATGTGAAATTTGCTATAAATCTTTTACCAGCTCCAGTCATTTTAAATATCACCAAAAAACCCATATTGTTGGAGATGGAGTATCCGAGTGGAATAAAACAGCAGCCGTAGCACGTAACGTTCCCAATATAAACCCTGGTCATGAACGGCTTCTCTCTCACGCCAAGACAATTGTTTGGGGAGAGAGATTGCCAACATCCACCCCAGATATGGCAGAAACCTAA
Protein Sequence
METEHPVPSTQVGATENHKQSERFPIRGPLINNISNMPPFGLPASAYEFNPNARLTIKFDREMFNSSLFDSEIEISPAGIGNNMAFRFNRNDLFRPTHFDFSNRGNMLLNGHFTPSNLEVGENLDTKRQQHLNEFGMKKPEMKSKPFKCDVCKKSFSSSGGLTVHYRTHTGNKPFKCDLCSKTFSNSSHYNYHMRVHSGDKPFKCQVCNKEYSCANGILYHQRTHHFSQDTKPLKCDVCNKLFSSLGGLTVHYRSHTGDRPFKCEVCFKTFTSSSHCKYHQKSHLETPTKKTLKCDVCHKLFSSSGGLQVHYRMHTGDRPFKCEVCLKSFTSSSHFKYHQKSHVVSNEKKTLKCDICDKLFSSSGGLVVHYRTHTGHRPFKCEICYKSFTSSSHFKYHQKTHIVGDGVSEWNKTAAVARNVPNINPGHERLLSHAKTIVWGERLPTSTPDMAET