Tsal001213.1
Basic Information
- Insect
- Tuberolachnus salignus
- Gene Symbol
- -
- Assembly
- GCA_956483605.1
- Location
- OY101429.1:21488434-21492996[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0079 0.85 10.6 0.5 1 23 333 355 333 355 0.96 2 12 0.00023 0.025 15.4 1.2 1 23 363 385 363 385 0.98 3 12 0.00019 0.021 15.6 1.8 1 23 392 414 392 414 0.97 4 12 8.9e-07 9.6e-05 23.0 1.3 1 23 420 442 420 442 0.98 5 12 0.0041 0.45 11.4 1.3 1 23 449 471 449 471 0.96 6 12 6.1e-06 0.00066 20.3 0.1 1 23 477 499 477 499 0.96 7 12 4.2e-05 0.0046 17.7 0.1 1 23 505 527 505 527 0.97 8 12 6.6e-07 7.2e-05 23.4 1.2 1 23 533 556 533 556 0.96 9 12 1.6e-06 0.00017 22.2 0.9 1 23 562 585 562 585 0.96 10 12 2.5e-05 0.0027 18.4 1.4 1 23 591 613 591 613 0.98 11 12 8.1e-05 0.0087 16.8 0.4 1 23 619 641 619 641 0.94 12 12 0.004 0.43 11.5 0.1 1 21 647 667 647 671 0.92
Sequence Information
- Coding Sequence
- ATGGCTACTGATCCAGAACAAGAAAGAACCTCTACTGCAACATCCAATACATGTTTAATTTGTGATGGTAGCACTGGAGTGTCGTCCCGAAATGCAATATCGATATTTCAGCATCGTGTGACGTCCTCTGATCGTATTGTTGTTAAAGTAATTGATGGTGTACTTGGTATAGCTCTTTCTTCTGAAGATGTGCATTCTATTGTTGTATGCCGTCGGTGTTTTAAATCTCTAAATGAAGTGGATGAACTTGAAGATCGGTTAGCTGACATTAAACTGGAGCTTACCACTCAGTATCAACGTACACTTAAaAGTAAATCTGAAGTTGTTGATATCACTATGGATTCTATCGATATTGATGATCCTCTTATTAGCGATACCCCAAAACCTGTTAAAAAAAGAGGACGCCGTCCAAAGGTTAAGGATGAATCTGCTAATGGGCCTGTTCCTAACGAAGAAACTTTACAAAATGATATTGAATGCAAAGaacttaaaaatcaaaataagtgTTCATCAGTAGAGAATTTAATAGAAATGTTAGAAAATGATGATAAGGATAATGATGAGGGTTGTTCATCTAATGATATTGAGGGTATTCAAAAATTGATTCGTCCTGCTGATATAAAACAGGAAGCTATACATCCAGAATTAGATCATCTTGATGAAGATATAGATGACCCTGGAATAATTGATGAAGATGATGATGAAGATGATGATGaagacgatgatgatgatgatgatgatgatgatgatgacgacgatTCAGAATATGATGAACGAGAGGATGCTAAAAATTGTGGTGAATCTAGTAATactaaaaaatcaaaagttggtAAAAATTCAGTAAAGAAAAAAACTCCAGAAATTCTCATACCACAAATGttggtTCATCATGATGGAGAAGTTTATACTTGCTTATTGTGTAgtgtagaaaataaatttaccgcAGATGCTAGAGGTATTGTTGTTCATGCCAAAAATATACATCAGATTAAGTTGTTTATTTGTGATATATGTGGGCAAGAATTCCTTAAGAGACCAGAATTGATGAAACATCTAGAACATCATGCAAATAGTGAAGATGGCAACTTTGTTTGTGATGTCTGTACTAGAGTATTTACCAATGTGCGTATGTTCAGAGTGCATAAGAAAATGCATATGCCTCAATCAAAAAACCATACATGCGAAACATGTGGCCGACAATTTGCatcTCGTAACACGTTAGAAGAACATAACAATACACATACTGGTGTGCGTCCATACCGCTGTGAAATTTGCGGTAAAGATTTTACATCGAAGTATACATTTAAAGCGCATGAAAAAGTGCATACTAATCGTGAGCGAAATTTTACTTGTATAAATTGTGGGAAAGCTTTCCTTACTGAACAAAATCTTATTCATCATGAACGCACCCATTCTGGgcttaaaaattatgtatgccAAAAATGTGGTAAAGCTTTTGGCACTGCACGGAATTTGGAAGTGCATTATGTTGTGCATACTGGTTACAAGCCGTTTATCTGCCGCATGTGTGGCAAAGCATTTGCTAGAAAAGCTGAGATTAGAGATCATGAGCGTATTCACACCGGTGAAAAACCATATCAGTGTGAATTTTGTGGAGCAACATTCAGtcaGAGAAGCAACTTGCAATCTCATAAACGAGCTACCCATTATGATGATAAGCGTTATAAGTGTACAGATTGCGGTAAAGGATTTAAGAGACGCCGTTTATTAGATTATCATATGAAAGCTGCACACACTGGTGAAAGGCCTTTTAAGTGTGATGTGTGTCAAGCATCATTTATTTATcccgaacattttaaaaaacatgCACGTATTCATACAGGAGAAAAGCCTTATTTATGCGAAgtttgtGGTAAAGCATTCAACAGTAGAGATAACAGAAATGCTCACCGTTTTGTACATAGCGATAAAAAACCTTATGAATGTTTAGTGTGTGGTGCAGGGTTTATGCGTAAACCATTGCTTTATAATCATATGACCCAAGCCGGTCATTTAAATGATACTATTGTTGTAAATCAACCGCGACTAGCGTCTAGTCCAGTAACCATACAAGAAATCCCAGAAGATATTCAAATGCCAGGCACTGATTCTGAACTAGAATTAGCCATGGTAGTTGATGCTGATGGAAATCAAACTGAATTAcGTGACATGACTGAAGAGGAAAGAAAGTTGTTTGCCGGAGAATTAAAAGAGCACATTTTATTACCCAGTAAACAAGAAGTTCTCGGAGATGATTTAAATTCAGTTGAACAAATActtgttgataataaatatcaaATCCAATACACAACAACTGACCAACATGGCGATGTTCATACTATGTTGAATATGGATCATCATGGAGATGACTCTGATGTTGTCGATGTTGGTCATATGGAAACAGTGACTGTAAGTGTGGGTGGTCAAGAACACCGTCAATTAATGGTGCCAGCTACTCGTCATATTACATTAAATGAAAGTGACGCAGCTGCATTTGCCGAACATGCAACTATAAATGGTGAAAATGTGCAAAtagtacaaatacaaatacaagatGATGATGGAGAAGATCAAAAACATTGGTTTAACATTATTCAACCACAACAAGGATAg
- Protein Sequence
- MATDPEQERTSTATSNTCLICDGSTGVSSRNAISIFQHRVTSSDRIVVKVIDGVLGIALSSEDVHSIVVCRRCFKSLNEVDELEDRLADIKLELTTQYQRTLKSKSEVVDITMDSIDIDDPLISDTPKPVKKRGRRPKVKDESANGPVPNEETLQNDIECKELKNQNKCSSVENLIEMLENDDKDNDEGCSSNDIEGIQKLIRPADIKQEAIHPELDHLDEDIDDPGIIDEDDDEDDDEDDDDDDDDDDDDDDSEYDEREDAKNCGESSNTKKSKVGKNSVKKKTPEILIPQMLVHHDGEVYTCLLCSVENKFTADARGIVVHAKNIHQIKLFICDICGQEFLKRPELMKHLEHHANSEDGNFVCDVCTRVFTNVRMFRVHKKMHMPQSKNHTCETCGRQFASRNTLEEHNNTHTGVRPYRCEICGKDFTSKYTFKAHEKVHTNRERNFTCINCGKAFLTEQNLIHHERTHSGLKNYVCQKCGKAFGTARNLEVHYVVHTGYKPFICRMCGKAFARKAEIRDHERIHTGEKPYQCEFCGATFSQRSNLQSHKRATHYDDKRYKCTDCGKGFKRRRLLDYHMKAAHTGERPFKCDVCQASFIYPEHFKKHARIHTGEKPYLCEVCGKAFNSRDNRNAHRFVHSDKKPYECLVCGAGFMRKPLLYNHMTQAGHLNDTIVVNQPRLASSPVTIQEIPEDIQMPGTDSELELAMVVDADGNQTELRDMTEEERKLFAGELKEHILLPSKQEVLGDDLNSVEQILVDNKYQIQYTTTDQHGDVHTMLNMDHHGDDSDVVDVGHMETVTVSVGGQEHRQLMVPATRHITLNESDAAAFAEHATINGENVQIVQIQIQDDDGEDQKHWFNIIQPQQG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01329191;
- 90% Identity
- -
- 80% Identity
- -