Basic Information

Insect: Tuberolachnus salignus
Gene Symbol: -
Assembly: GCA_956483605.1
Location: OY101429.1:45369841-45374845[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00028 0.03 15.1 1.0 1 21 120 140 120 141 0.93

2 14 0.00011 0.012 16.4 0.7 1 23 152 174 152 174 0.99

3 14 0.0056 0.61 11.0 6.4 2 23 181 202 180 202 0.97

4 14 0.00012 0.013 16.3 0.2 1 23 208 230 208 230 0.98

5 14 1.3e-05 0.0014 19.3 1.4 2 23 237 258 236 258 0.97

6 14 0.0078 0.85 10.6 3.4 1 23 264 286 264 286 0.95

7 14 0.00046 0.05 14.4 0.3 1 23 396 418 396 418 0.99

8 14 1.2e-06 0.00013 22.5 1.1 3 23 426 446 424 446 0.97

9 14 7.1e-06 0.00077 20.1 0.7 2 23 475 496 474 496 0.97

10 14 7.7e-06 0.00083 20.0 0.6 1 21 537 557 537 558 0.96

11 14 1.5e-06 0.00016 22.3 0.4 2 23 582 603 582 603 0.98

12 14 0.0002 0.021 15.6 0.8 3 23 611 631 609 631 0.98

13 14 6.8e-06 0.00074 20.2 0.6 1 23 658 680 658 680 0.98

14 14 3.2e-06 0.00034 21.2 2.7 1 23 686 709 686 709 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00028	0.03	15.1	1.0	1	21	120	140	120	141	0.93
2	14	0.00011	0.012	16.4	0.7	1	23	152	174	152	174	0.99
3	14	0.0056	0.61	11.0	6.4	2	23	181	202	180	202	0.97
4	14	0.00012	0.013	16.3	0.2	1	23	208	230	208	230	0.98
5	14	1.3e-05	0.0014	19.3	1.4	2	23	237	258	236	258	0.97
6	14	0.0078	0.85	10.6	3.4	1	23	264	286	264	286	0.95
7	14	0.00046	0.05	14.4	0.3	1	23	396	418	396	418	0.99
8	14	1.2e-06	0.00013	22.5	1.1	3	23	426	446	424	446	0.97
9	14	7.1e-06	0.00077	20.1	0.7	2	23	475	496	474	496	0.97
10	14	7.7e-06	0.00083	20.0	0.6	1	21	537	557	537	558	0.96
11	14	1.5e-06	0.00016	22.3	0.4	2	23	582	603	582	603	0.98
12	14	0.0002	0.021	15.6	0.8	3	23	611	631	609	631	0.98
13	14	6.8e-06	0.00074	20.2	0.6	1	23	658	680	658	680	0.98
14	14	3.2e-06	0.00034	21.2	2.7	1	23	686	709	686	709	0.96

Sequence Information

Coding Sequence: atggaACATGACACTCAGactgtaatttatattgaaaattggaATGAATTATGTCGATTATGTTTACGCAATGATCAACCACTACAAAATTTGTTCTTCGAAGAGAGCACCTTGGAAAGTGTTCAAGAAGTTACAAATCTTActttTATTATTGATGACTCTTTACCTAATTCTGTATGCAAATTATGTATTGATCAAGTTAATTCATTTGTTGAATTTCGAGTACGTTGCAAAGCTACAGATGATTGGCTACGGAATGAAGCAACAGCTGATAAGGATATTAATGTTGAAATTATAGAAGTAGTGGACATCTGGAATGACGaagtaAAAACTTCTTATACAGAAACCGAAGATGGTTATTTGTGTGATAAATGTCATAAAGTTTTCAAAACACTTTCTGGTATGCTATCCCAtttaagaaatgaaaaaaagttaGAAATTGGTTCAATGTCATACCAATGCCATTTTTGTGAAGAGGCATTTGCAACTATTCAACAAGTTTGGATACATATGAAAACTCATGCGCCtggtgaaaaaattaaatgtcgtCATtgtgaaaaatgtttcaaatcgTACTTAACACTTGTACGTCATGAAAACAAACATGATGGgacttttaattatatatgttcGTATTGCGGAAGAGCTTTTGTAACACCATATGGTCGTGATAGACATGAAATGACTCATAATGCAGCCAAAAATGTGCAATGTGAAAAATGTACAATGACATTTTACACTAGAGCTGAATATAATAGACATATGAGATACCATGACAATGTTAGAAATTTTCTATGTTCATTTTGTGGTAAACGATTTTTTGAAAGTGCTCATAAGACAATTCATGAACGCACTCATACTGcTCATCGGAACACAATTGAACTCATGCGGGTCTGTATGTGCACTACTCGTGCAGCTATTGCAGTTATTTTGATTAGTAGTCATTTGCCTGTCCATgatCCATCAGAATTTGTTCCGGAAGTAATTCAGACTAAAGCCTTATTAGTTGAACCAGATCAGTTTGTAGAGCAGATAATTGATGATTCAGAATCTGTTGACgataatcaacaaaataaatgtgaaattgAATTATCCAACTGTATTGTACAAACGGAAGACGCCGTTGAGGAAGTGATGCAAATGACTGTAGTCGAAGAAGAAACATTGGAGACAAACAGTAGTGATTATCGGTGTACCATCTGTGGCAAAGAACTGTTGTCCGCGTACACCCTTGGAAACCATATGCGTTCTCATACGGGAGAACGTCCTTATGGTTGCAGTGTATGTGAAAAATTCTTCAAGACCAAATCCAATTTGAACGAACATTATCGAGTTCATAATCCGGAACTCCGTTGGATGAAGACTTCGAGCAGGGATATCCCATCTATAACACGAGTAACCGTCACTTCGGAAGACATACTGACGTGCAATCATTGTTCCAAAGTGTTTGTTTCGTTGGACGCGTTATCTGCACACGAACGCACTCACAACCATGAGGAATTACATCAGCAGCAAACGCTACTGCTGCAGGAGCAGGAAGAACTGCAGGAGCAAGAAGAATTGCAGGAGCAGGAAGTACTGCAGGCCGCGGTCGACGCGGTGATGACGTTTACGTGCGAACAGTGCAACAAAAACTTTACGTCCAAGTCGCTACTGTCCGTGCACATAAACAACAATTGTTCAGACGTGGCAGTGGATGCGAACGCACCCATGGAGAACAACGCAATGGTAGACCGGCAACGTCAGTGTCCGTACTGTGGCAAGCAGTTCCGCTCGGCTATCACTCTGGAGAACCATAAACGGGTGCACACCAGAGAAAAGCCGTTCGGGTGTGACTTGTGCTCAAAATTGTTCCGCACTAAGGGGAACCTGTTGGAGCACAAGCGCGTACATAACAACAGTCTATGGCTGATGAAGAGCAACTCCAAGTTGCCGGCAGTACATCCCGACACCGGTGCCTCGGACCTGCGGTTTCAGTGCACGTACTGCGCTAAACCGTTCCGGACGTCCACTGCCCTGTTGAACCACGAGCGCGTGCATACCCGCGAAAAGCCGTTCGAGTGTACTGTGTGCGGCAAGCTGTTCCGGACCAAGTCCAATATGACGGAACACATGAAGGGTTGTCACGATATCGACTCGTCGGTTAACAGCGGCACAGACGAGGTACAAGTATTCACGTTCAAGAACCAAACGGCTTTCTGCAAGTCATAA
Protein Sequence: MEHDTQTVIYIENWNELCRLCLRNDQPLQNLFFEESTLESVQEVTNLTFIIDDSLPNSVCKLCIDQVNSFVEFRVRCKATDDWLRNEATADKDINVEIIEVVDIWNDEVKTSYTETEDGYLCDKCHKVFKTLSGMLSHLRNEKKLEIGSMSYQCHFCEEAFATIQQVWIHMKTHAPGEKIKCRHCEKCFKSYLTLVRHENKHDGTFNYICSYCGRAFVTPYGRDRHEMTHNAAKNVQCEKCTMTFYTRAEYNRHMRYHDNVRNFLCSFCGKRFFESAHKTIHERTHTAHRNTIELMRVCMCTTRAAIAVILISSHLPVHDPSEFVPEVIQTKALLVEPDQFVEQIIDDSESVDDNQQNKCEIELSNCIVQTEDAVEEVMQMTVVEEETLETNSSDYRCTICGKELLSAYTLGNHMRSHTGERPYGCSVCEKFFKTKSNLNEHYRVHNPELRWMKTSSRDIPSITRVTVTSEDILTCNHCSKVFVSLDALSAHERTHNHEELHQQQTLLLQEQEELQEQEELQEQEVLQAAVDAVMTFTCEQCNKNFTSKSLLSVHINNNCSDVAVDANAPMENNAMVDRQRQCPYCGKQFRSAITLENHKRVHTREKPFGCDLCSKLFRTKGNLLEHKRVHNNSLWLMKSNSKLPAVHPDTGASDLRFQCTYCAKPFRTSTALLNHERVHTREKPFECTVCGKLFRTKSNMTEHMKGCHDIDSSVNSGTDEVQVFTFKNQTAFCKS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -