Tsal002873.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tuberolachnus salignus
Gene Symbol
-
Assembly
GCA_956483605.1
Location
OY101430.1:3043146-3046721[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 29 0.15 16 6.6 0.7 1 21 42 62 42 63 0.95
2 29 8.3e-05 0.009 16.8 3.0 1 23 99 121 99 121 0.99
3 29 5.5e-06 0.00059 20.5 1.4 1 23 127 149 127 149 0.98
4 29 0.00064 0.069 14.0 1.6 1 23 155 177 155 177 0.99
5 29 4.8e-05 0.0052 17.5 1.9 1 23 183 205 183 205 0.99
6 29 1.7e-06 0.00019 22.1 2.5 1 23 211 233 211 233 0.99
7 29 1.7e-06 0.00018 22.1 2.0 1 23 239 261 239 261 0.98
8 29 1.3e-07 1.4e-05 25.7 0.5 1 23 267 289 267 289 0.98
9 29 5.4e-07 5.8e-05 23.7 0.6 1 23 295 317 295 317 0.98
10 29 0.68 74 4.5 6.4 3 23 442 464 440 464 0.82
11 29 2.5e-05 0.0027 18.4 1.9 1 23 470 492 470 492 0.99
12 29 1.1e-05 0.0011 19.6 0.9 1 23 498 520 498 520 0.97
13 29 7.1e-05 0.0077 17.0 6.5 1 23 526 548 526 548 0.98
14 29 0.00057 0.062 14.1 2.5 1 23 554 576 554 576 0.94
15 29 2.1e-05 0.0023 18.6 0.2 1 23 582 604 582 604 0.98
16 29 0.0016 0.17 12.7 2.0 1 23 630 652 630 652 0.97
17 29 3.8e-05 0.0041 17.9 3.0 1 23 658 680 658 680 0.99
18 29 5.3e-05 0.0058 17.4 0.6 1 23 686 708 686 708 0.99
19 29 6.8e-06 0.00074 20.2 0.3 1 23 714 736 714 736 0.99
20 29 0.00012 0.013 16.3 0.6 1 23 829 852 829 852 0.97
21 29 4.5e-06 0.00049 20.8 0.7 2 23 887 908 886 908 0.97
22 29 0.0097 1.1 10.3 2.2 1 23 914 936 914 936 0.97
23 29 2.4e-05 0.0026 18.5 1.7 1 23 942 964 942 964 0.99
24 29 0.0041 0.45 11.4 0.2 1 23 970 993 970 993 0.98
25 29 0.00036 0.039 14.8 5.5 1 23 999 1021 999 1021 0.98
26 29 0.00022 0.023 15.5 1.9 1 23 1027 1049 1027 1050 0.95
27 29 1.4e-06 0.00015 22.4 1.8 1 23 1071 1093 1071 1093 0.98
28 29 1.9e-05 0.0021 18.8 3.6 1 23 1099 1121 1099 1122 0.95
29 29 0.64 69 4.5 2.1 2 20 1161 1179 1160 1181 0.90

Sequence Information

Coding Sequence
ATGACAGAACACCTTGTAAAAAAATCAGCAGCTGAAGATGAATCATTTCAAAATCCATTGGAGTCTATGCATTTTGAAATGGTTGAAGGCAAAGGTGAAAGTATTCAACTTCTACCTAAAGAATATATATGTGATAAGTGTAAGGTTGTTTACCACAAACGTACACAGATAGTGAGACATTtaagattgtcttattgtaacAGAAAGACTCCAGTTATTGGTAAAGTAGTTCCTTTTATTAGAAAACTATCaggtttatcaaaaattaaacaatcatattttcaatataaacttTATCAGtgtaaaatttgttcaaaatcttttcttaataaaactaaattgacACAACATACTAGAATTCATAGTGGTGAAAAgccatttatttgtaaaatttgcaATAGAGGTTTTTCTAGTTCTTACAGTTTAAAGAGTCACGGGAAAACTCATTCTGGTGAAAGACCATATAAATGTGATATTTGTGAAAAAGCTTTTGGTTATTCACACAtcttaataaatcataaaagaACCCATTCAGGagaaaaaccatttaaatgtGAATTTTGTCAAAAATGTTTTGCATTGCCTGGAACTTTGGTGGCACATAAACGTACACATACAGGTGAAAAACCATACAAATGTGATATGtgtgaaaaaacattttctttaaaCAGCAGTTTAAATTCTCACAAAAGAACGCATACTGGTGACAGACCAcataaatgcaatttttgtcCAAAGGCATTTGCAAAAAGTGGCGATTTGGAGAGGCATACACGAACTCACACCGGTGTTAAACCATTTCGTTGTGATATCTGTGATAAGTCGTTTACGCAGTCGTCTGGCTTGATCATACACAAACGAATTCACACGGGCGAAAGACCGTTTGAATGTGATACATGCGATCGGTCATTTACTAATTCAGCCAGTTTGGTAGCACACAAACGAACCCATACTGGCGAAATACCACATATGCCTTTGCACGTCCTCAATGCACAGACAGCATCAAATAATCAAAACActattgacaaaaataatatattctcagAAATGCCTACATCTACAGCAGCGTTATGGGACACCGATGTTCCGACACCTTCTGTTGGAGATTATAGTTACGGCTGGACCAGTTGGTTTCAAGGGGAAACAGATCTTAGTATTATTAAAGATCCTATTCATGGTACTGTCGGACAACCGGTAGGGTTCATACAATCTGGTCATAACGAAAGAGAAAACATTAGCGGAGTAGTTACAACAAACTGCGAAAATACCACTTCGGCCAAAAATGTTATACCGATTAAAAGACTTGAGGGCCGTTGGTTAGATTGTGATGTATGCCATAAAACGTTTCCTTACTCTTCCAGGCATAAATTGATCGAACACCAACGGACACACACGCGtgaaaaaccatttaaatgCCTTACATGTCAAAAATCATTTTCCTTGTCCAGTACTCTAATTGTGCATAAGAGAATGCATACCGGCGAAAGACCATTCAAATGTAATTTGTGTACTAAAGCGTTTGCTCAAAAATCCAAATTGaatatacacaaaataattcACACGGGTGTAAAGCCGTTTCATTGTAATTTGTGTCAAAAGACATTTGCTCATTCCTCGAATTTGTCCGACCACAAGAAAACTCACATTCAAGAAAGACCGCATAAATGCGATATTTGCCAAAAGCAGTTCACGCTCCCAAATAGTTTGCGAAAACATAAAGTGTTGCACACCGGATACAAACCGTATGTATGCGAAATCTGTCAAAAAGCCTTTGCCAAGAAGGCCAGTCTGGATCGTCACAGGGGAACACACGACGGCGTACCTCAATGGACAAAACCATTTGCGCACGGCGATAAGGAAAAGCGAACGAACTATACGGAAAAGCCGTTCAAGTGTCATGTGTGTTATAAACCGTTTGCTAGTCTGAACGGAATGACTAGGCACGCGACTAAACATAATGGACAAGATCTATTTCAGTGTGAAGTGTGCCATAAGACGTTTACGGGTTTTTCAGTGCTCGCCAGACACAAGCGTACACACACAGGAGAGAAACCTTTTCAATGCGATTATTGTCCTAAAGCCTTTGCTTATTCGTCAATACTGGTCACGCATAAACGTACGCATACCGGCGAGAAACCATACCGGTGCGACATTTGTCCCAACGCGTACACACAATCATCCAGCTTAATAGTCCACAAGCGAACCCATTGGAAACGACCAATACTTATTAACGACACTGAACAACCGATGACATTGCTGCCGCCCGAACCTAAAGCGAACCAATATGAATTGTCGACTACGTCTTCAACAACTGTGGATGACTACACTGACAATTGGTCGGGTTGGTATTCTACCGAAACCGAAATATCTCCAGATACAAATGAACTGCCAAAAATTATGCAAAACCCAATTATTGTGGCACCGTCCGTACAAATGCCGGTACAAATTTTTAATGGCCAGAAATTGAAAATCGCACCACAGAAATTTAAGTGTGCTAAATGTAAAGAGACTTTTGACGAGAGCAAATTGTTATTGAAACATATTAGAGAAGCGCACAGGCccaatatgaataaaataaaaaagaccgAGCAAATGTTGTCCGCATTGAAAAATACCACtgctaaacataaaaaaaaacgaggcgAGCGCCAAAGATTAGAATGCGACATTTGTCAAAGGCCATTTAACGACTCGTACAAATTGAAAGTGCACAGACGCACACATACTGGCGAAAAGCCCTTTAAATGTGAATTTTGCGAAAAATCATTCATAGACTCTTGTATTCTGAAAGAACATGAGAAGATACATACCGGTGAGAATTTCTTTGAATGTGACATTTGCCAGAAATCCTTTCTGCAGTTGAGTACGTTGACCACACACAGGCGTACGCACACGGGGGAAAAACCGTATAGTTGTGTTGTTTGCCAAATGCCATTTGCATTAATGAGCAGCATGAAGACGCATATTCGAAGAGCGCACACCGGCGAAAAACCACACAAATGCGATTTTTGTCAGAAAAGATTCGTGAAGCGTAATGACATGATACGTCATCGAAGAACACATACTGGTGAACGTCCGTTTGTATGTGAAATATGTCAACAATCCTTCACCCAATCGTATGTTCTCGTTTTACATAAGAGAAATCATCATTCAGGTGATAAGCCTTTTACAGGGAAAAATTATAGTACCGTAACCCCCAAAGAAAAACCATTTGAATGTGATGTATGCTTTAAATCGTTTGCCAGCCAATCTACATTGAATACACATAAACGGACTCATACGGGTGAAAAACCATTCCACTGTGGAATATGCCAGAAGTCCTTTACTCAATCGTCGGGTCTCATTGCTCATAAAACTACTCATCATCCTGAGGACAAATCGTTCGAACAAAAATCTATTGTACCTACACAGCAATTATTCAATTCCACAAACATCATTTACACACACAAAAGACCTCAATACAGTGGCGATAGACCTTGCCAATGCGGTGTTTGTCAGTCATCGTTTAGCCAACTGTCCACtacaaatacacattttaaccAGCCCACGTCTGATAGAaacacgtattatttataa
Protein Sequence
MTEHLVKKSAAEDESFQNPLESMHFEMVEGKGESIQLLPKEYICDKCKVVYHKRTQIVRHLRLSYCNRKTPVIGKVVPFIRKLSGLSKIKQSYFQYKLYQCKICSKSFLNKTKLTQHTRIHSGEKPFICKICNRGFSSSYSLKSHGKTHSGERPYKCDICEKAFGYSHILINHKRTHSGEKPFKCEFCQKCFALPGTLVAHKRTHTGEKPYKCDMCEKTFSLNSSLNSHKRTHTGDRPHKCNFCPKAFAKSGDLERHTRTHTGVKPFRCDICDKSFTQSSGLIIHKRIHTGERPFECDTCDRSFTNSASLVAHKRTHTGEIPHMPLHVLNAQTASNNQNTIDKNNIFSEMPTSTAALWDTDVPTPSVGDYSYGWTSWFQGETDLSIIKDPIHGTVGQPVGFIQSGHNERENISGVVTTNCENTTSAKNVIPIKRLEGRWLDCDVCHKTFPYSSRHKLIEHQRTHTREKPFKCLTCQKSFSLSSTLIVHKRMHTGERPFKCNLCTKAFAQKSKLNIHKIIHTGVKPFHCNLCQKTFAHSSNLSDHKKTHIQERPHKCDICQKQFTLPNSLRKHKVLHTGYKPYVCEICQKAFAKKASLDRHRGTHDGVPQWTKPFAHGDKEKRTNYTEKPFKCHVCYKPFASLNGMTRHATKHNGQDLFQCEVCHKTFTGFSVLARHKRTHTGEKPFQCDYCPKAFAYSSILVTHKRTHTGEKPYRCDICPNAYTQSSSLIVHKRTHWKRPILINDTEQPMTLLPPEPKANQYELSTTSSTTVDDYTDNWSGWYSTETEISPDTNELPKIMQNPIIVAPSVQMPVQIFNGQKLKIAPQKFKCAKCKETFDESKLLLKHIREAHRPNMNKIKKTEQMLSALKNTTAKHKKKRGERQRLECDICQRPFNDSYKLKVHRRTHTGEKPFKCEFCEKSFIDSCILKEHEKIHTGENFFECDICQKSFLQLSTLTTHRRTHTGEKPYSCVVCQMPFALMSSMKTHIRRAHTGEKPHKCDFCQKRFVKRNDMIRHRRTHTGERPFVCEICQQSFTQSYVLVLHKRNHHSGDKPFTGKNYSTVTPKEKPFECDVCFKSFASQSTLNTHKRTHTGEKPFHCGICQKSFTQSSGLIAHKTTHHPEDKSFEQKSIVPTQQLFNSTNIIYTHKRPQYSGDRPCQCGVCQSSFSQLSTTNTHFNQPTSDRNTYYL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00340758;
90% Identity
-
80% Identity
-