Tsal013898.1
Basic Information
- Insect
- Tuberolachnus salignus
- Gene Symbol
- bab2
- Assembly
- GCA_956483605.1
- Location
- OY101434.1:24383064-24387293[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.5 7.1e+03 -2.8 0.0 33 43 135 146 132 147 0.79 2 2 1.3e-17 3.8e-14 52.5 0.0 3 44 253 295 251 296 0.95
Sequence Information
- Coding Sequence
- ATGGCTGATCAGAGATTTTGTTTGCGATGGAACAATCATCAGCCCAACTTGGTGAACGTCATGACGGGTCTGTTGAACAGCGAAATGTTCGTCGACGCCACCATCGCTGCGGAGGGACGGAAAATTCAAGTGCACAAAGTCGTGTTATCCGCTTGCAGCAGTTATTTTCAAATGCTCTTCAATGAAGTACCCTGTCAACATCCAATAATTATCATCAAAGATATGTCTTACAATCATTTGAAgacattaattgaatttatgtaTTACGGGGAAGTTAATATCTCGCAAGATCAACTTCCAatcattttaaaagcGGCGGAAAGTTTGCAAATCAAAGGCTTAACTGAAAAAACAATGTTTCCGTTTGCTACAACACGATCGGCAGAAACAGAATATAGTTTGCTGTCTCCATCAGCTAAACGTAGAAAAATGCATCTCTTGAAATCATCTAGTGAAAAATCTGATCATAATAGTTCTATTGAAGATATTTCAGTAACTGAACAAGATAATATGTCAGCTagATCTCAACCAACGCCACAAGGACAAGAAGCTTCAAAATCTATTAGTAGTTTAAGCAAACAATCATCTACAGAAAATAACACAACAATTGTTCATCATAAACCTGAAAATTGGTCGTTTTTGGAGCAGCTCTCTGATTGCCCGCCTCACAGTGTCTACGCCATACCCAAAGCCAAAGCAGCATCCAAACCAGAGAATAAAGTTCGCAAAAAACGAGAACCCGGTATACGCGAGAGTGACCGTTTTAAAGCTGCTCTTGAAGCTGTGCGTACAGGCCGTATGGGATTTTGTCGTGCTGCCCAAGAGTTTGGTATAAATAATCGTACATTATGGctagagtacaaaaaaaaaggttatccCGTTCATCGAAAAGGTCAATCTTCGACGTCTGTTCCACTACCTTCGCCGGCATCATCAATCAATGGTCAATCCTCCGATCAAGTATATCAAGCACCATTATATGAACCTTCAACGTCTCAGACATCGGCAGTTGATCACCCTGCTTATGTTTCACAAATGTATTCGCAACCATTGACAGTAATTAACCCATGCTATTATTCTTCACCTGCACCACCAATATTTTCTGCAGAAAACCATAcatga
- Protein Sequence
- MADQRFCLRWNNHQPNLVNVMTGLLNSEMFVDATIAAEGRKIQVHKVVLSACSSYFQMLFNEVPCQHPIIIIKDMSYNHLKTLIEFMYYGEVNISQDQLPIILKAAESLQIKGLTEKTMFPFATTRSAETEYSLLSPSAKRRKMHLLKSSSEKSDHNSSIEDISVTEQDNMSARSQPTPQGQEASKSISSLSKQSSTENNTTIVHHKPENWSFLEQLSDCPPHSVYAIPKAKAASKPENKVRKKREPGIRESDRFKAALEAVRTGRMGFCRAAQEFGINNRTLWLEYKKKGYPVHRKGQSSTSVPLPSPASSINGQSSDQVYQAPLYEPSTSQTSAVDHPAYVSQMYSQPLTVINPCYYSSPAPPIFSAENHT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00463266;
- 90% Identity
- iTF_01432936;
- 80% Identity
- iTF_01499759;