Tsal016611.1
Basic Information
- Insect
- Tuberolachnus salignus
- Gene Symbol
- retn
- Assembly
- GCA_956483605.1
- Location
- OY101436.1:9350979-9358782[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.2e-18 1.2e-14 54.8 0.0 27 89 2 62 1 62 0.94 2 2 3.6 1e+04 -2.7 0.2 52 53 172 173 158 194 0.50
Sequence Information
- Coding Sequence
- ATGGCCAAACGCGTATTGGACCTGTACACCCTGTACAAGTTGGTCGTCCAGAGAGGCGGAATCGTGGCGGTGATCACCAAAAAATTATGGCAGGAGATCATCCGGGGACTCGGGCTGCCACCGTCCATAACGAGCGCGGCGTTCACGTTGCGGACACAATACGTCAAATACTTGTACGCGTACGAGTCGAGAATGAACCAGTTCAGCACGTTGGACGAGCTGAACATGGCCATAGCGGGCAACCGGCGCGAGGGCCGGCGGAACAAGTCGCTGATGTATTCGGACatgccgccgccaccaccgtccGGACACCCGCACCCAATGCACCAAATGCACTCCGGCGGACACCCGTCGCACGCGATGGTGCAGGCCGGCGGCGTGGGCGCCGCGCCACCGCCGTCGCACCATCACCAGCACTACGCCAACGTGCTGGCCGCCGAGGACCGGCATCGGCGGCAGTCGTGCAGTCCGCCGCAACAGCACCACCAGCAACACCAGCAGCacctgcagcagcagcagcagcagcaccaaCTACTGCAAGAGTGCAAGACGACGTCCGCAGCTGGGTCGGTGCAACAGCATCAGGCGTCCCGGTTGCCGGTCACCGGCGCGctgccgcctccgccgccgatGCCGCCGTCGTCTCTGTTCAACGGCCACCAACCGTCGCCGTACCAACACAtccagcagcaacagcaacagcatcAACCCAACGCCGTGCAGTCGACCAACGAGCAGAACAACAAACAGAGAGACGTCTTCATTAGTTACGGTGGTGGCGGTTCATCGTTGTCGATCAAAAACGCGTTAAAGGAAAACCCGTTGGAATCGTATCAAGAACGGCGGCAGTCGAGTCGGCGGCCGGCCGGTTAA
- Protein Sequence
- MAKRVLDLYTLYKLVVQRGGIVAVITKKLWQEIIRGLGLPPSITSAAFTLRTQYVKYLYAYESRMNQFSTLDELNMAIAGNRREGRRNKSLMYSDMPPPPPSGHPHPMHQMHSGGHPSHAMVQAGGVGAAPPPSHHHQHYANVLAAEDRHRRQSCSPPQQHHQQHQQHLQQQQQQHQLLQECKTTSAAGSVQQHQASRLPVTGALPPPPPMPPSSLFNGHQPSPYQHIQQQQQQHQPNAVQSTNEQNNKQRDVFISYGGGGSSLSIKNALKENPLESYQERRQSSRRPAG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -