Tdic019592.1
Basic Information
- Insect
- Trypoxylus dichotomus
- Gene Symbol
- -
- Assembly
- GCA_014905495.1
- Location
- BNES01000107.1:1769181-1770812[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 9 8e+02 1.3 0.5 1 18 54 71 54 71 0.85 2 11 4.6e-08 4.1e-06 27.4 0.6 1 23 132 154 132 154 0.99 3 11 0.07 6.2 7.9 2.8 2 23 159 181 159 181 0.95 4 11 1.6e-06 0.00014 22.6 0.2 1 23 184 206 184 206 0.98 5 11 0.051 4.5 8.4 0.5 3 23 253 273 251 273 0.96 6 11 0.31 27 5.9 0.5 1 23 277 300 277 300 0.96 7 11 0.019 1.7 9.7 1.4 1 23 303 325 303 325 0.95 8 11 0.00012 0.011 16.6 1.1 1 23 336 360 336 360 0.97 9 11 0.00033 0.029 15.3 2.8 1 23 367 389 367 389 0.96 10 11 0.00071 0.063 14.2 2.1 1 20 395 414 395 417 0.93 11 11 0.00064 0.057 14.4 0.5 1 21 423 443 423 444 0.93
Sequence Information
- Coding Sequence
- atgGAAGACAAAAGTGAAGAAATTTGCCGCACATGTTTAGGAgccaataaaaatatgtttaatatttttacatcgGGCAGTCCGTCAGATATCAACTTGGCTGATATGCTGATGACTTTTGTAGCAATAAATATTACCAATGAGGAAGATTTACCACATTTCATGTGTTCAGACTGCATAAAGACTCTCACAATATCATATAATTTTAAGAAGCAATGTGAGAGATCTGATATTTTATTAAGATCAGGTAAAAATGAAGTAACTAATAAAAAGGAAACCACTATTGAAGTTGTGATGGCTGATGACTTTGTAGCAGAAAATGAGATTGAAAGTGAGGAGGAAAATACAAATGCtgatatattcgaagaatttgaggtggataaaaacaaaaaattcaaatgtaatttatgcgGTCGTGCCTTTATTAAATCTGGTAATTTGACGATACACATGAAAACACATACTGAAAATAATGAGTGCACATACTGCAATAGTAAATTTGCTAGTCATCAAGAATTACTGCTACACAATAAAAAGAaccataaatatttcaattgtaCTATCTGTGATAAAAGCTACGCAACTGGTAATGCCTTAAATGCTCATATGAGAATGCACAAATCACCAAATTCTGCGAAAGCTGAAGAAAATGCTGAATATATTTGTGTTGTTGGAGTAAATGAAGTGCCagtaaaagcaaaaaatattaaatttgaaggtGAAATTGAAATGATGGAGAAGAACATAACAACAAATTGCAATCAATGTTCTTTGCCTTGTATTAATGAAGAAGCACTACAATTACATGAAAAAGTTCATGAAGAAAATCACGAATGCGAAAGTTGTTCGTTAATTTTTGTAGCATATAGTGATTTTGTTGAACATAATAAAACTGTCCATAACATTCATAATTGTAGTAAATGCGTAAAGTCATTTCCAACTGTCTATGGTTTGAGTGGACATTCAAGTACCCACGTTGTAGCTGAAGAAAATCCTTGTATTATGTATAAATGCACCATTCCTTCATGTAACAAGAAATATCGGACATTGgattatttaaaacaacataTTCTTCTTCACACCAACGAGAATAAAGTATACTTGTGCAAGGTTTGTGGAAAAACTTATAAATCTAGCAATTCTTTCTATTACCACAAGAAAATTCATGGAGACCAACGACCATATGTTTGTAAATATTGTGGTAATGCTTATAAGATATATTCTCATTTGAAAACGCATATGTGGAGACATGGAAACATAATGCCACATCGCTGTGGAAAATGTGGCAAGGGTTTTACCAGAGGACAAGTTTTGCGCAAACATTTAGAATCAAATTGCGGTTCTAAACGAAGAAGGAAACATTTAGCAGATACCACCACAAAAgtagaagaagaggaagatgaTGATGATATTAAGAACAATGTCAGTGACAAATAcatggaggaaattgaagatGCTGAAGTTACCAACGAAGCCGGTCCATCATGA
- Protein Sequence
- MEDKSEEICRTCLGANKNMFNIFTSGSPSDINLADMLMTFVAINITNEEDLPHFMCSDCIKTLTISYNFKKQCERSDILLRSGKNEVTNKKETTIEVVMADDFVAENEIESEEENTNADIFEEFEVDKNKKFKCNLCGRAFIKSGNLTIHMKTHTENNECTYCNSKFASHQELLLHNKKNHKYFNCTICDKSYATGNALNAHMRMHKSPNSAKAEENAEYICVVGVNEVPVKAKNIKFEGEIEMMEKNITTNCNQCSLPCINEEALQLHEKVHEENHECESCSLIFVAYSDFVEHNKTVHNIHNCSKCVKSFPTVYGLSGHSSTHVVAEENPCIMYKCTIPSCNKKYRTLDYLKQHILLHTNENKVYLCKVCGKTYKSSNSFYYHKKIHGDQRPYVCKYCGNAYKIYSHLKTHMWRHGNIMPHRCGKCGKGFTRGQVLRKHLESNCGSKRRRKHLADTTTKVEEEEDDDDIKNNVSDKYMEEIEDAEVTNEAGPS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01253069;
- 90% Identity
- -
- 80% Identity
- -