Tdic007669.1
Basic Information
- Insect
- Trypoxylus dichotomus
- Gene Symbol
- -
- Assembly
- GCA_014905495.1
- Location
- BNES01000022.1:108410-113965[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.011 0.96 10.5 6.4 1 23 49 71 49 71 0.99 2 13 0.0029 0.25 12.3 1.5 1 23 77 100 77 100 0.98 3 13 3.2e-05 0.0028 18.5 0.1 1 23 111 134 111 134 0.97 4 13 0.0038 0.34 11.9 4.7 1 23 140 163 140 163 0.98 5 13 0.21 19 6.4 2.7 1 23 175 198 175 198 0.91 6 13 0.37 33 5.6 1.9 1 23 207 231 207 231 0.90 7 13 0.0023 0.21 12.6 2.4 1 23 237 259 237 259 0.97 8 13 1.2e-05 0.0011 19.8 0.7 2 23 268 290 267 290 0.95 9 13 0.00024 0.022 15.7 1.9 1 23 297 319 297 319 0.94 10 13 8.6e-06 0.00077 20.2 1.5 1 23 325 347 325 347 0.98 11 13 1.2e-05 0.0011 19.7 0.5 1 23 353 376 353 376 0.95 12 13 0.0049 0.44 11.6 3.6 1 23 387 410 387 410 0.96 13 13 0.038 3.4 8.8 3.0 1 23 416 438 416 438 0.93
Sequence Information
- Coding Sequence
- ATGTACCAAAAAGATCTAATTCCGTTCGATTTCAGACTGCTTACCGTGCATTTCCGAACGAAGAATGGCGGAACGTCCCGACGGAAGGCCGCATGGAAGGAACGCAGTAACAACGGTGATGGCCTTACGAACGGCGCGGAAACGTACAAATGTTCATTATGCGAGTACGAAACGACCAACAAGCATCGTTTCCGACGTCATCAGTATACGCACAGCGAGATGAAACGCTACCGTTGCCCGCAATGTCCGTACCGATCCAAGACCAAGTATTATATCGGCGATCATCTGCGAAGGAGGCACGGTGGCGGCGCGAACGGCACGGAAACGCGCTACCCGTGTCCGCTCTGTAACGAGAGCTTTGAGAGGGTGTCGCTCTTGCACGTCCACGTGAACATGGCGCACAGCGGCAACCGCTCGCACAAGTGCCCGAGATGCCCGTTCCGGACGGCGAACAAGAAACTCTTCGTCAGACATCATCGTACCGCTCACGTCGTCGCCGCCGCGGCCGCTCATACCAGGCCGTTCCGCTGCCGATCCTGTCCGAAGCGGTTCGCGTGCGAGAAATCGTTACGGTCGCACGTCGACAATCTGCACGTTGACGCGAACCGAACGAAACGTTTCAAGTGTCCGAAATGCGAACGCTTCGAGACCAAGTACGAGGCGAGCCTGCGCAAGCATCTGCTCAACGTGCACGGCGGCGTTAAACGGTTTCGTTGCGCGGAATGCCCGTACAGGACGACGTACAAGCTCAGCTTGGAGCGCCATCTATGCCTGCACGAAAACGGATTGTCGGTGGGATGCGAATGCGAAGAGTGCGGCGAACGGTTCGTTACGAGAACGGACCTTGCGGCGCACACACGTCAAAACCACACGCCCGCCGATAATATGTACAGGTGCAAAAAATGCGAATATCGGACGTCGCGCAGAGGCGACCTGAAGAAGCATTCGGTCGTCCACGAGCCCGTCAAACCGCATCGATGTCCGGAATGCGGTTACCGATCGAAACTGAAGGGCAACCTGAAACGTCATCTCGCCACGCACAAGCAGACGCGACCGTTCCAGTGCGACGTCTGCCGGCGCTCGTTCACGGAGAAGGTGTCGCTGACGCGCCACGTTCAGGCGCTGCATCCGCCCGCGGACGCCGCTCCCTCGAAACCGTTCAAATGCGAACGGTGTGACTTCCAGAGCCGCCATCGTAGTAGCCTATATAAACATCTGACGATCGTCCACAGCGATACGAAACGGCACGAATGCATCGAATGCCCgttcaaaaccaattacaagtACCTTCTGACTAGGCATATGTACAAGCATAACGCGCGATCCGGTCGCCTTTAG
- Protein Sequence
- MYQKDLIPFDFRLLTVHFRTKNGGTSRRKAAWKERSNNGDGLTNGAETYKCSLCEYETTNKHRFRRHQYTHSEMKRYRCPQCPYRSKTKYYIGDHLRRRHGGGANGTETRYPCPLCNESFERVSLLHVHVNMAHSGNRSHKCPRCPFRTANKKLFVRHHRTAHVVAAAAAHTRPFRCRSCPKRFACEKSLRSHVDNLHVDANRTKRFKCPKCERFETKYEASLRKHLLNVHGGVKRFRCAECPYRTTYKLSLERHLCLHENGLSVGCECEECGERFVTRTDLAAHTRQNHTPADNMYRCKKCEYRTSRRGDLKKHSVVHEPVKPHRCPECGYRSKLKGNLKRHLATHKQTRPFQCDVCRRSFTEKVSLTRHVQALHPPADAAPSKPFKCERCDFQSRHRSSLYKHLTIVHSDTKRHECIECPFKTNYKYLLTRHMYKHNARSGRL*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -