Basic Information

Insect: Trypoxylus dichotomus
Gene Symbol: -
Assembly: GCA_014905495.1
Location: BNES01000105.1:2338598-2342243[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.00059 0.052 14.5 1.3 2 23 329 350 328 350 0.97

2 9 3.8e-05 0.0034 18.2 3.8 1 20 356 375 356 378 0.95

3 9 3.3e-06 0.0003 21.5 1.5 1 23 384 406 384 406 0.98

4 9 2.2e-05 0.002 18.9 5.1 1 23 412 434 412 434 0.96

5 9 1.2e-05 0.001 19.8 0.2 1 23 440 462 440 462 0.97

6 9 7.7e-06 0.00069 20.4 0.2 2 23 469 491 468 491 0.95

7 9 7e-05 0.0062 17.4 1.0 1 23 497 519 497 519 0.97

8 9 1.8e-05 0.0016 19.2 2.3 1 23 525 547 525 547 0.99

9 9 0.00032 0.029 15.3 2.6 1 23 553 575 553 575 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.00059	0.052	14.5	1.3	2	23	329	350	328	350	0.97
2	9	3.8e-05	0.0034	18.2	3.8	1	20	356	375	356	378	0.95
3	9	3.3e-06	0.0003	21.5	1.5	1	23	384	406	384	406	0.98
4	9	2.2e-05	0.002	18.9	5.1	1	23	412	434	412	434	0.96
5	9	1.2e-05	0.001	19.8	0.2	1	23	440	462	440	462	0.97
6	9	7.7e-06	0.00069	20.4	0.2	2	23	469	491	468	491	0.95
7	9	7e-05	0.0062	17.4	1.0	1	23	497	519	497	519	0.97
8	9	1.8e-05	0.0016	19.2	2.3	1	23	525	547	525	547	0.99
9	9	0.00032	0.029	15.3	2.6	1	23	553	575	553	575	0.98

Sequence Information

Coding Sequence: ATGGACCACCTTAACGATCTCTTACTAGACAACACAATATGCCGAACTTGCTTAAAAATGCAAAGAAAACTCTATAATATCTTCAAGCACGTTGTAAACAAGAAACCTGTGATAAATATGCTTATTGAATGTGCAGCAATAAAAGTGGAATTCAACGACGGTTTGCCAGAAAACATTTGCTGTGCATGCGTAACAAAATTAACCACGGCATGtagtttcaaaacaatggcgaatgAGTGCGATACTAAATTACGGGATATGGCAAGGAAAGTTAAAGAGGATAGAATCTCACATGACGAGGTGGAAAGGGCCTTAATACATAAACCTGTAGAAAACGATACTTTTTCAAATAATGTTCCTAAATCGGCAAATTTTGGAAAAGATGAGTTGACGAGAAGGAGGAAACGTAGAAATCTCATTAATATGTTCGAATACTCTAAATGCAATAAGTCGATACCTGCCttgttattggaaaatattagtattaagGTACAAGAGGATGATGGATTACCATGTAATATATGCACTGCTTGTCTTAACAAATTACATTCTATGATTGAATTTAAAAGTATGGCTATAGAATCTGACATTAAATTGCGAAACCACATGCCACATAATTGTGAGGTTGAAGAGGAAGGTATGACATGTGATGAGGAATATTCTGTTTCTAGGGATACATCATCAATAAACATTGATAATGAATTGCAAAAGGAAAGTATACTGCTCGAACCCTGTTTAGAAAAAGTTAAAAGTGAGATATGTGATGAAACAATCGTATTTGATGAATCTTGCATAAAGAAAGATCATGATACGCATTGTTCTGATGATTTCAACTATGACGAATCTACTTCAAAGGAGGAATTAAAGGATGATATTCGTATAAGTTCAGAAGATGAGGCTTTTATAAAATCAAGTGCTTTGGTTACCGAatcgcaaacaaaacaagtataTTTGACCAAAAAAGAACGAAAcagcaaaattatatattgtagAGAGTGCAAACGAACATTTGGTTATCGTTACTATTTTGAAATTCATGTACGTAAGCATCTAGGTGATACACCTTTTAAATGCGAAGTTTGTGGTAAAAGTTTTGTTCGGAAATTCCAgcttaatatacataaaacatgtCATTCTGACAATAGACCGTTTTCTTGTGAAGAGTGTGGAACACATTTTAAAACGAATTGGGGACTTCAAAGTCATCAAAAGGTGCACTCCGATCATAAACCTCATCAATGCGAACAGTGCGGTAAAAGCTTTAAGAACTTATGTAATTTACGAGCACATAAAGTCAGacatgaaaatatcaaacagTTTATTTGCGAACTTTGTGGCAAGGCGTTTGTTGATAAAAGAGGCCTAAAGAGTCATAAAATAAGCCACACGGAAGGGACAGATGTTCCTTGCCCAGAGTGCGGAAAGATATTCCGAAGTAAGAGAAGTGTGCAAGACCATTTGAGATTATCGCATCCCAAGAAAAAACGTCACGTATGTGATTACTGTGGAAGAGCTTTCAGTCGTAAGAGAGTTATGGATAATCACGTGCGAATTCATACTGGGGAGAAACCATTTACGTGCAAGGTGTGTAACAAATCGTTTAGACAAATGACGATACTAACATTACACATGCGTACACATACCGGGGAAACCCCCTACGCTTGTAAATTATGCCctagcaaatataaatattcgcATCTTCTACAAAATCATATGAAAGTACATGtcgaaaaaaaatga
Protein Sequence: MDHLNDLLLDNTICRTCLKMQRKLYNIFKHVVNKKPVINMLIECAAIKVEFNDGLPENICCACVTKLTTACSFKTMANECDTKLRDMARKVKEDRISHDEVERALIHKPVENDTFSNNVPKSANFGKDELTRRRKRRNLINMFEYSKCNKSIPALLLENISIKVQEDDGLPCNICTACLNKLHSMIEFKSMAIESDIKLRNHMPHNCEVEEEGMTCDEEYSVSRDTSSINIDNELQKESILLEPCLEKVKSEICDETIVFDESCIKKDHDTHCSDDFNYDESTSKEELKDDIRISSEDEAFIKSSALVTESQTKQVYLTKKERNSKIIYCRECKRTFGYRYYFEIHVRKHLGDTPFKCEVCGKSFVRKFQLNIHKTCHSDNRPFSCEECGTHFKTNWGLQSHQKVHSDHKPHQCEQCGKSFKNLCNLRAHKVRHENIKQFICELCGKAFVDKRGLKSHKISHTEGTDVPCPECGKIFRSKRSVQDHLRLSHPKKKRHVCDYCGRAFSRKRVMDNHVRIHTGEKPFTCKVCNKSFRQMTILTLHMRTHTGETPYACKLCPSKYKYSHLLQNHMKVHVEKK*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -