Tdic016383.1
Basic Information
- Insect
- Trypoxylus dichotomus
- Gene Symbol
- -
- Assembly
- GCA_014905495.1
- Location
- BNES01000076.1:1311724-1320118[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0016 0.14 13.1 1.1 3 23 373 393 371 393 0.96 2 11 0.0019 0.17 12.8 2.1 2 23 400 422 399 422 0.94 3 11 0.0001 0.0092 16.8 1.6 1 23 429 452 429 452 0.97 4 11 0.0047 0.42 11.6 0.2 1 23 458 480 458 480 0.97 5 11 4.3e-05 0.0038 18.1 0.8 1 23 486 508 486 508 0.97 6 11 2.1e-06 0.00019 22.2 1.0 1 23 514 537 514 537 0.97 7 11 0.01 0.93 10.5 2.5 2 23 549 571 548 571 0.96 8 11 1.8e-06 0.00016 22.4 0.6 1 23 579 601 579 601 0.97 9 11 6.9e-07 6.2e-05 23.7 1.7 1 23 607 629 607 629 0.98 10 11 4.9e-06 0.00043 21.0 1.6 1 23 635 657 635 657 0.99 11 11 0.007 0.63 11.1 3.1 1 23 663 686 663 686 0.94
Sequence Information
- Coding Sequence
- ATGCCCACCTTGAACTTACCGAAACTGTCGGCAAAAATGGTTTCTGCGAATACTAATGGATGTAATTCGACGGATTCGGGTACAAACACTGCGTTGGCGGGAAAAGAAGTGTTCCACAAGAAATGCGCTGTAATCAATTGCAAATCCGAAAACAAATTTATCTACGATTTTCCAAATGATCAGAAGGATAAGAAGATGTATCTGAAATGGACTGCTTATTGTAAGAACGATAAACTGAAGAATATGCAAGCTGAGGAATTACAGAGATATGGGATATGTGGTGCTCATTTTCAAAACGGGTCGTTGGTTTTGCCGAAATCAGTATCAATGACGCAAGCACTTAAACATAGCGGGTTCGAGATGGAAGACGAATCTCTCGTAGCTAGTCGATTGTGTAGGTTGTGTTTTGATATAGGAAACGTGGATTTATTTTCCTGTCGATATTGCAATAAGCTGCTCAAAGATATCGTGAAAACATTTATACCAATTGAAATTGAAACAGACGATGCATCAAAGGTAATTTGCGAAGTTTGCAAGTGCGAAGTAATAAGATTCCACGACTTCCTACAGAAAAGCCTGCAAGTTGATGAGTTTTTTAAGTCGATGATCAAAGGAGTTGCTACTAAATCGAATGTAGCGGCTGGTTCTTCTAAAAAAACCGAGAACCAGCCTGTGGTGGAAATTACAGACGATGAAGAAGTTGTCGAGATAAGAGATGAAATGGAAGGAACAGTGGTCGCGGAGGACGTTGAAGATCAGGAACCGTCCTTATTGAGACAACGATTAACTATGGGCTTGAAAGAAACATTGGAAAACTCAAAAGAAACGCAAGAAATGACAGAGAAACCAAAACCGCCATTGAAAACTAGTATCGAaggtgttaaaaagaaaaactgtaaATATGCACCATCTTACGTACTGACATTTTTCCACAATTACGGAAAAGCACCGAGTTCACGGCCTCCTCCCgtgaaaaaatataaacgattgaaaaaaacacatttaaagaataaaaaagtCGAGACCATAGTCTGCATACACTGCAACAAAACAATCGAGAGTCTGGACGCCGTACAAGATCACTGGAAGGCGGAAAATCATGACCCCGTGATGATCTGCAAGAAATGCAACCAGATGTTCAAAACTACCGATGAACTCGATGACCATTCCAAAATGCACATCATAGATGCGAGGTGTATATGTGAGAGATGCGGGAAACAATTCTCTAGAAAGGAGATCCTTAATACGCATCTGAAACAGGTGCACAACAAGGAGAATCGCCATTTCCAATGCAAGGTGTGCTCGGAGAAGTTTCCAACTAAATATCGTCTCAAATCGCACGTGAATAGGATCCATACCAAAGAGAAACGCTATTGTTGTGAAAAATGCGGCGCAGTTTTCGCGTGGGGCGCGAATTTGAGGTCCCATCAGATGATCCACACCGATTACAAGCCTCATGTGTGTTTGATATGCAATAAAGGTTTTCGTAGGAGAGCTAAACTCGCAGTCCATTTAATAAAACACACTGGAGAGAGAAAATTCCCGTGCGAAATATGCGGTACGGCTTTTAAAGGTAAATATAATCTACGAAAACATAACAGGCGATACCATTCCGGCCCAAATGAAACAACAGCAACTCCCAAAAAATGCACGAAATGCGATTTCACTTCTAATTCCGACGGTCTCCTACGCGTACATATGCGACACGAACATAGGAGGTTGAAGAAGGAAATATACGACTGTCAGTACTGCCAGAAGAGGTTCGCCAATTCATCCATGCTGAAGATCCACATGGTGGTACACACCGGAACGAAGAAGTTCGAATGCGAAATATGCAATAAGAAATTTTCGCAGAAACCCCATTTGCAATCGCATCTATTGGTCCATACGGGTGAGAAACCGTACAAATGCAAATATTGCCCGAAACAATTCGCCCATCTATCAACTTTAGTTGTGCATGAGAGGATCCATACCGGGGAAACACCGTACGTTTGTCAATTTTGCGATAAAGGATACGGACATCTCACTAACTATAAAAAACATGTCTTCTCTCAACATGGCGTCGTTATtccaaaacaaagaaattatgcACCAGTAAAAGTGGAAAAACAAGAGGAAGAAGtagtagaaaaagaagaagaagaggaggaggaggaggaagaAAGAGGTGAATGTAATGTTGACGCTTTGGCTGAATTAACGCTTATCAATATTGCGAGAGAAGTTGAAAATGATATGGATATAACAGGGGAAAATGGCCTTTTATTGATTGAAAACGACGTTCCGTTTGAAGAAGaaagttaa
- Protein Sequence
- MPTLNLPKLSAKMVSANTNGCNSTDSGTNTALAGKEVFHKKCAVINCKSENKFIYDFPNDQKDKKMYLKWTAYCKNDKLKNMQAEELQRYGICGAHFQNGSLVLPKSVSMTQALKHSGFEMEDESLVASRLCRLCFDIGNVDLFSCRYCNKLLKDIVKTFIPIEIETDDASKVICEVCKCEVIRFHDFLQKSLQVDEFFKSMIKGVATKSNVAAGSSKKTENQPVVEITDDEEVVEIRDEMEGTVVAEDVEDQEPSLLRQRLTMGLKETLENSKETQEMTEKPKPPLKTSIEGVKKKNCKYAPSYVLTFFHNYGKAPSSRPPPVKKYKRLKKTHLKNKKVETIVCIHCNKTIESLDAVQDHWKAENHDPVMICKKCNQMFKTTDELDDHSKMHIIDARCICERCGKQFSRKEILNTHLKQVHNKENRHFQCKVCSEKFPTKYRLKSHVNRIHTKEKRYCCEKCGAVFAWGANLRSHQMIHTDYKPHVCLICNKGFRRRAKLAVHLIKHTGERKFPCEICGTAFKGKYNLRKHNRRYHSGPNETTATPKKCTKCDFTSNSDGLLRVHMRHEHRRLKKEIYDCQYCQKRFANSSMLKIHMVVHTGTKKFECEICNKKFSQKPHLQSHLLVHTGEKPYKCKYCPKQFAHLSTLVVHERIHTGETPYVCQFCDKGYGHLTNYKKHVFSQHGVVIPKQRNYAPVKVEKQEEEVVEKEEEEEEEEEERGECNVDALAELTLINIAREVENDMDITGENGLLLIENDVPFEEES*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -