Tdic010149.1
Basic Information
- Insect
- Trypoxylus dichotomus
- Gene Symbol
- SCRT1
- Assembly
- GCA_014905495.1
- Location
- BNES01000033.1:374486-377943[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00037 0.033 15.1 0.5 2 23 43 65 42 65 0.94 2 11 0.026 2.3 9.3 0.2 1 23 85 107 85 107 0.98 3 11 0.0024 0.21 12.6 0.9 1 23 111 133 111 133 0.99 4 11 0.0039 0.34 11.9 0.2 1 23 139 162 139 162 0.98 5 11 0.00038 0.033 15.1 0.6 1 23 168 190 168 190 0.95 6 11 0.029 2.6 9.1 0.3 2 23 197 219 196 219 0.93 7 11 5.7e-06 0.0005 20.8 1.1 2 23 231 252 230 252 0.98 8 11 2.1e-06 0.00019 22.1 1.1 3 23 263 283 261 283 0.95 9 11 1.3e-05 0.0011 19.7 2.0 1 23 289 311 289 311 0.98 10 11 4.5e-07 4e-05 24.3 2.5 1 21 317 337 317 339 0.96 11 11 0.018 1.6 9.8 0.0 1 21 345 365 345 366 0.92
Sequence Information
- Coding Sequence
- ATGTCCATCCTGATTGTGTTACAGGCAGTTTTAATGCATATTAAGACCACGATATTTGGCGTTTGTTTTGATAACCCCGCCGCCTCCAAGAAGAAATCCAAAAAACGAAAACGAGGTCCTCCATGGATCTGCGAGAAATGCCAAACGATCTTCAAGAATAGAGTCTCCCTCTATAATCACAAACGCGAAGCTCACATCCAACTCCCCAAGGATCACCTATCGAGTTATACCTATAATCCGCAAACCGAGCGGTTCACCTGTAAAATATGCACGCTGGAAAcgaaagcgaaagaaaaaatgGCCGCCCACGTCCTAACCCATGAAGAGAAGTTCACGTGCAAAGTCTGCAGCGAGGTTATTTACTCCGCGTATAGGTTTTCGGTTCATATGCGCAAGCACAACAAGGAGGGCGGTTACAAATGCCCATTCTGCGTGTACATCTCGAGCAGACCTTCGGGAATTTTCGTCCATATCAATCGGATGCATCTGGGACGATACGCTTACATGTGCAAGCATTGCGGTAAGGGTTTCGACGATGTGGTGATGTACAAGGAGCACGAGGCGTCCCACGAAAGAGCTCAATCGGTTTCCTGCGTCGTCTGCAAGAAAGAATTCGCATTCACGAGGTACTTAGTGTATCATCAGATAAACTACCATACGGTTTCAACTGTCGATCCGAAATCGCAAAATAAATGCGCGATTTGCGACAAGACCTTCATCAGGAAACGAATCCTTAAGGCCCATATGAAGACTCATGAGCAGGACAAGAGCGTGCGATCCCACCTTTGCGAATGGTGCGGCAAGAGTTTCCGCGATAAAACCTCGTTGAACGGGCATATCATGTCGCATACCGGGAATAAGCCGCACAAATGTAGTTACTGCGAGAAATCCTTCGCCAGGAAGGGTTTCCTGGTGCTCCACGAGAGGATACATAGCGGCGAGAAGCCTTACACTTGCGATCAGTGCGGAAAATCCTTCAACCAACCTACGGCGTTAAAGAGACATATCAGGTGCCATACTGGGGAACGCCCTTACATTTGCGAAGCGTGTGGCGCCACCTTCACGTCGAGAACGATTTTGAATAAACATGTTATAACGCGTTGCGGTTGA
- Protein Sequence
- MSILIVLQAVLMHIKTTIFGVCFDNPAASKKKSKKRKRGPPWICEKCQTIFKNRVSLYNHKREAHIQLPKDHLSSYTYNPQTERFTCKICTLETKAKEKMAAHVLTHEEKFTCKVCSEVIYSAYRFSVHMRKHNKEGGYKCPFCVYISSRPSGIFVHINRMHLGRYAYMCKHCGKGFDDVVMYKEHEASHERAQSVSCVVCKKEFAFTRYLVYHQINYHTVSTVDPKSQNKCAICDKTFIRKRILKAHMKTHEQDKSVRSHLCEWCGKSFRDKTSLNGHIMSHTGNKPHKCSYCEKSFARKGFLVLHERIHSGEKPYTCDQCGKSFNQPTALKRHIRCHTGERPYICEACGATFTSRTILNKHVITRCG*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00627670;
- 90% Identity
- iTF_01121057;
- 80% Identity
- -