Basic Information

Insect: Trypoxylus dichotomus
Gene Symbol: -
Assembly: GCA_014905495.1
Location: BNES01000105.1:2475615-2477444[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00043 0.038 14.9 5.0 1 23 207 229 207 229 0.98

2 11 4.4e-05 0.0039 18.0 4.4 1 23 235 257 235 257 0.97

3 11 0.00047 0.042 14.8 2.5 1 20 263 282 263 288 0.93

4 11 3.6e-07 3.2e-05 24.6 2.4 1 23 370 392 370 392 0.99

5 11 0.0055 0.49 11.4 2.2 1 23 398 420 398 420 0.86

6 11 9.3e-07 8.3e-05 23.3 0.9 1 23 426 448 426 448 0.99

7 11 0.00067 0.059 14.3 0.0 1 23 455 477 455 477 0.95

8 11 1.3e-05 0.0011 19.7 2.8 1 23 485 507 485 507 0.98

9 11 0.00019 0.017 16.0 2.2 1 23 513 535 513 535 0.96

10 11 7e-08 6.2e-06 26.8 1.5 1 23 541 563 541 563 0.98

11 11 0.14 12 7.0 3.5 1 23 569 592 569 592 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00043	0.038	14.9	5.0	1	23	207	229	207	229	0.98
2	11	4.4e-05	0.0039	18.0	4.4	1	23	235	257	235	257	0.97
3	11	0.00047	0.042	14.8	2.5	1	20	263	282	263	288	0.93
4	11	3.6e-07	3.2e-05	24.6	2.4	1	23	370	392	370	392	0.99
5	11	0.0055	0.49	11.4	2.2	1	23	398	420	398	420	0.86
6	11	9.3e-07	8.3e-05	23.3	0.9	1	23	426	448	426	448	0.99
7	11	0.00067	0.059	14.3	0.0	1	23	455	477	455	477	0.95
8	11	1.3e-05	0.0011	19.7	2.8	1	23	485	507	485	507	0.98
9	11	0.00019	0.017	16.0	2.2	1	23	513	535	513	535	0.96
10	11	7e-08	6.2e-06	26.8	1.5	1	23	541	563	541	563	0.98
11	11	0.14	12	7.0	3.5	1	23	569	592	569	592	0.96

Sequence Information

Coding Sequence: ATGGAGGAGAAGAGAGGGGCATTAATAAAAGAGGAACATATCGTTGCAGAAAATCACTTATTCGATAGTCCGTCAGAAATATGCACTTCAATTGACTTTAATAATTCAAAGTCTTCTGAAACGGGTTGCAAGATTATAGAAGAGGAGAGGGAGGTGTCAGTGAAAGAAGAACATGACATCGTAGAAAATAACATACCTGAAGTTTCTTCAGGAATATACCCTTCATATCAACCATTTGCATCTATCGACTGTTGGAATCTGAATTTTCCTGAAACCGGTTGCAAAGGTTTGGGTTTGAAACAGGAAGATACAGAAGATGTAACGAGTTACAATTATGGGACACCTATagcatttgaaaatgaaaaagtagaATTGGACATAGAATCATCAGATGATATGAAATGCATCTCTTTAATAACGACTACTGATTTTTCAATCAATTATGGGGCTACAGAAAATTCTAATCCAAGTTCTAtaataaaaaggagaaaattgaGGATGGAGTTAAATGAAAGAGATGAAAGTAACAGCTTAGTATACAGTAATGAATGCAATAACACATTAACGGTTGGTGATAGTCTAGGAAGACATCTTGACACTCGACCTGGAAATTTACTCTTTAAATGCAAAGAATGTAATCGAGAATATGTTAACAAGCATTTTCTTCGAAAGCATGCATATACACACAGTTTGGTTGCGAGGTTTCCTTGTGTCGAATGCGGGAAGATGTTCAAGTATAAACACCATGTAGAAAGGCATAAGAAGATACATAAAACTGAAGGACCTTACAAATGCGATCTCTGCAATAAGACGTTTAAACTACTAACAGCATTGCGAAGACATTCTGAAACATGCTCAATACACACCAACATAGAATCAGATGGTATGAAATGCATATCTTTAATAACGACGACTGATTTTTCGGTCAATTATGGGGCTACAGAAAATTCTAATCCAAGTCCCATGACAAAAACAAGGAAATTCGGGATGGAGTTAAATGAAAAAGGTAAAAGTGATGACGTAGTGTACAGTAACGAATGCAATAAGACATTAACTCTTCATGATAGTGCAGGAAGATGCCTTAGCACTCGTCCTGAGAATTTACCCTTTAAATGCAAACAATGTGATCGACGATTTGCTAACAAGGATCTACTCCGAAAGCATGTTAATACGCACGGCCTGGTTGCAAGATTTCCTTGCGATGAATGCGGGAAAATGTTCAAGTATAGACGTCATGTAGAATTTCATAAAGCGTCACATAAAACTGAACGACCTTACGAATGCGATATCTGCAATAAGACATTTAAACTACTGAAAGCATTACGAAGACATCAGATAACACACACCGAAGGGAAAGCTAAGTACGTATGTGAGATATGCGACAGAGCCTTCGCGGAAATACGATCTTTGAATAATCATAAGGGAATTCACATTTCACCCGATGACAGGAGTTTTATCTGCAAAACCTGCAGTAAGTCGTTCGGTTCGGACAGAAGCCTAAAGAAACACATGAAAACTCACAGCAATGATAAACCTCACATTTGCACGTATTGCGAGCGAACTTTTAGGTATAAGTGGGTTCTAAAGAAACACGTTTTGATCCACACGAATGAGAAGCCATTTCCGTGCAAGGTGTGCGAAAAAACATTCCGCCAAAAGGCAACTTTATCGAATCATATGCGAACACATACCGAGGTAACCTCCTATCTCTGCAAGCTGTGTCACACCTTTTTGCAATCTTCGCGTCGACTTTTGACTCATATGAGAAAGGCGCATGGGAAAGAATACCAAGAGCAAGTGAAGCAAGCGAAAGACGTTGGATTAGgttaa
Protein Sequence: MEEKRGALIKEEHIVAENHLFDSPSEICTSIDFNNSKSSETGCKIIEEEREVSVKEEHDIVENNIPEVSSGIYPSYQPFASIDCWNLNFPETGCKGLGLKQEDTEDVTSYNYGTPIAFENEKVELDIESSDDMKCISLITTTDFSINYGATENSNPSSIIKRRKLRMELNERDESNSLVYSNECNNTLTVGDSLGRHLDTRPGNLLFKCKECNREYVNKHFLRKHAYTHSLVARFPCVECGKMFKYKHHVERHKKIHKTEGPYKCDLCNKTFKLLTALRRHSETCSIHTNIESDGMKCISLITTTDFSVNYGATENSNPSPMTKTRKFGMELNEKGKSDDVVYSNECNKTLTLHDSAGRCLSTRPENLPFKCKQCDRRFANKDLLRKHVNTHGLVARFPCDECGKMFKYRRHVEFHKASHKTERPYECDICNKTFKLLKALRRHQITHTEGKAKYVCEICDRAFAEIRSLNNHKGIHISPDDRSFICKTCSKSFGSDRSLKKHMKTHSNDKPHICTYCERTFRYKWVLKKHVLIHTNEKPFPCKVCEKTFRQKATLSNHMRTHTEVTSYLCKLCHTFLQSSRRLLTHMRKAHGKEYQEQVKQAKDVGLG*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -