Tdic012720.1
Basic Information
- Insect
- Trypoxylus dichotomus
- Gene Symbol
- -
- Assembly
- GCA_014905495.1
- Location
- BNES01000044.1:1332648-1344095[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00039 0.035 15.0 0.9 2 23 407 429 406 429 0.95 2 14 3.5e-05 0.0031 18.3 1.4 1 23 435 458 435 458 0.97 3 14 2.8e-05 0.0025 18.6 0.9 1 23 466 488 466 488 0.98 4 14 1.4e-05 0.0013 19.5 2.5 3 23 496 516 494 516 0.98 5 14 0.056 5 8.2 2.5 2 23 523 544 522 544 0.97 6 14 2.2e-05 0.002 19.0 2.1 1 23 550 572 550 572 0.99 7 14 2e-05 0.0018 19.1 3.4 1 23 577 599 577 599 0.98 8 14 8.4 7.5e+02 1.4 4.8 2 23 670 692 669 692 0.84 9 14 7.1e-06 0.00063 20.5 1.6 1 21 698 718 698 719 0.96 10 14 5.6e-06 0.0005 20.8 1.8 1 23 723 745 723 745 0.99 11 14 7.6e-05 0.0067 17.3 4.1 3 23 753 773 751 773 0.98 12 14 0.92 82 4.4 4.3 2 23 780 801 779 801 0.97 13 14 1.1e-07 1e-05 26.2 4.0 1 23 807 829 807 829 0.99 14 14 6.7e-06 0.0006 20.6 3.7 1 23 835 857 835 857 0.97
Sequence Information
- Coding Sequence
- ATGGAGGATGGTACATTGTTATGTGATGCGTTCCTCTGTCGTCTTTGCGGTGAAGAGAATAAAAATGGGACAAATTTGTACGTCTTGgaagaaaataaacaagattTAAGCCAATTAATTAACAAGTATTTACCGTTGAGGGTAGAAAATGATGGAAAATATCCGACAAGTATATGCCCTGACTGCAACATACAATTGGAAGcgacgaaattattttttgacttGATAATATTGGGTCAAACTAAACTTAGAGATTTATGGTATAAACAACAGGAGATTCTAAGTAGGCAGCAGTTAGATGTTGATTTACGTGAAAATGTTAATCCAACTTCGAGTGTTGGgacaaatacaatacaattgGATGAAACTGGTGGAAAGTTTATACAAATTTCATCTAATGGTTGTCTATTTCCATCCGATCACGAGCTTGGTGTAAGAATCAAAAGTTTAGAAAAACCAGCACAAAAAGGTGGTCATCCTTCAGACGAATCTAATAgaaatatagaagaaaatagaCTCCCACAAAACGAAAATTATGAACTTGAATTGGAGGACGATGAATTTGATGTCGACGATCAAAGAAAGAGGAGGATCGAAGTCCCTACAACATATCAAGCAGCTTTACAAGGAAAGGAAATGGACTGGATATTTAAAGATGAAGGTGATATTGATGGTTCTCTGCTAGAAAGTGAAACAAAGATACAACCTTCtgaagttaaacttgaaaatgaAGTTACTGATCATATGCAAAGTAGCGATGATGAGGATCTTGGAAAGTCAGCTGTTGAAGAAGCAATTATCAACGAAGTAAAGACGAAACCAGAATCCGCAATaacaacaaaaaataagtttaaatttgaatgtGAAATTTGCAGTGGAGTCTTTTTATGTGCAAATCGGTTAGAAATTCACAAATCACTTCATAATCTAAAGTGTCGATGCAACGGCGAGAACTGTGGTGTGGAAATGGATTCTAGGGAGGCTTTGGAATTGCATCAGGAAGAAACTGGACATGTTGGGATAACGTTGATAGAAAGTCTAGATTGTGGTGAAATACAACTGATACAATTAAATGATGCAATAAACGAAGAGGAAAATGTACAAGAAATTAGAGAGGAAATTGTCAAGAAGGAAACAACCGAAGAGCAAAGTGAACAGCCTAAAGAAGttaacgaaaatattaaaaatgatgaaGAACCCAAGATCACTTCCAAAATTAAGTGCCAGCCTTGCCGTAAAACCTTTGTGTCTGAGTATAATTATAAGAACCACATTAAAACTGTACACGAAAATGAGAAATCTTTTAAATGTGATAGATGTGATAAGACATATCGTTATGTGACCAGCTTAAAAAGCCACATGTTGATAGAACACGGTTCCAGAGCGCACAAAACATACGAATGTGATGTTTGTTTGAAGATTTTCTCGCAGAAGGGGCATTGGACCGCACATAAGCGTATTCATACCGgtGAAAGACCTTATGGTTGTGATCACTGTAATAGGAGATTTACTACATTGGGCCAATATAGAGCGCACCTCAGAACGCACACAGGCGAGAAGCCGTGGCAATGTGAATACTGTGCAAAGCAGTTTTTGCATCATGGCGCGTGGAAAAGTCACATTAGGCGGCATAAAAATGAAATGCCTTACCAGTGTCAGCAGTGCATGAAGAGCTTCACAGTAAATTCGGAGTTGACAAAGCATAAACGAGTACATATCGGAAAGCCTTACACCTGCAGTTTATGTTCTAAATCCTACGCGCATCCTTCAGATCTTTCAAGACACAAAAAGAAACATATGAAGGTGCTCGAGAATGAAAACGTTATGAAAGCGAATACATCAGAAGAATTAGATTCAGAAGGTGAAATCCGATTGATACAATTCAAAGGCTCGATAAACGAACAAGAAATTATCGAGAAAGAAACAACCGAAGAGAAGACCAAACAGCCTAAAGAAGTCATCGACAACATGGAGAATGATGAAAAATCCGAGATTACTTCGAAAATTGTTTGCCAGCATTGTCATAAGATCTTTTTGTGTCAGTATGATTATAAGAAGCACGTTGAAAATATACATGAAAATAAGAAATCTTATAAATGTGAGCAATGCGATAAAACATTTCGTACTATGATCACCTTAAAAAGGCATATGCACGTCAACAAAACATACGAGTGCGATGTTTGCTCGAAGATTTTCTCGCAGAAGGCGCATTGGACCGTACATAAACGTACTCACACTGGTGAAAAACCTTATGGCTGTGATCATTGTGATAAGAGATTTACTGCACCCAGCCATTATAAAATGCACCTCAAGACGCACACAGGCGAGAAACCGTGGCAGTGCGAGTACTGTACACAGCGGTTTTTGCATCAGGGCGCTTGGAAATGCCATATGAGGCGACATAAGAATGAAAAACCCTATCAGTGCCAACAGTGTACGAAGAGCTTCACAACAAATTCGGAGTTGACAAGGCACAAACGAACACACACCGGAGAGACGCCTTACGCCTGCAATTTATGTCCTAGATCCTTCAAGGATACTTCGCATCTTACGAAACATAAGAAGAGCCACATGAGGAAACtccaaaatgaaaaatga
- Protein Sequence
- MEDGTLLCDAFLCRLCGEENKNGTNLYVLEENKQDLSQLINKYLPLRVENDGKYPTSICPDCNIQLEATKLFFDLIILGQTKLRDLWYKQQEILSRQQLDVDLRENVNPTSSVGTNTIQLDETGGKFIQISSNGCLFPSDHELGVRIKSLEKPAQKGGHPSDESNRNIEENRLPQNENYELELEDDEFDVDDQRKRRIEVPTTYQAALQGKEMDWIFKDEGDIDGSLLESETKIQPSEVKLENEVTDHMQSSDDEDLGKSAVEEAIINEVKTKPESAITTKNKFKFECEICSGVFLCANRLEIHKSLHNLKCRCNGENCGVEMDSREALELHQEETGHVGITLIESLDCGEIQLIQLNDAINEEENVQEIREEIVKKETTEEQSEQPKEVNENIKNDEEPKITSKIKCQPCRKTFVSEYNYKNHIKTVHENEKSFKCDRCDKTYRYVTSLKSHMLIEHGSRAHKTYECDVCLKIFSQKGHWTAHKRIHTGERPYGCDHCNRRFTTLGQYRAHLRTHTGEKPWQCEYCAKQFLHHGAWKSHIRRHKNEMPYQCQQCMKSFTVNSELTKHKRVHIGKPYTCSLCSKSYAHPSDLSRHKKKHMKVLENENVMKANTSEELDSEGEIRLIQFKGSINEQEIIEKETTEEKTKQPKEVIDNMENDEKSEITSKIVCQHCHKIFLCQYDYKKHVENIHENKKSYKCEQCDKTFRTMITLKRHMHVNKTYECDVCSKIFSQKAHWTVHKRTHTGEKPYGCDHCDKRFTAPSHYKMHLKTHTGEKPWQCEYCTQRFLHQGAWKCHMRRHKNEKPYQCQQCTKSFTTNSELTRHKRTHTGETPYACNLCPRSFKDTSHLTKHKKSHMRKLQNEK*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -