Basic Information

Insect: Trypoxylus dichotomus
Gene Symbol: -
Assembly: GCA_014905495.1
Location: BNES01000105.1:2482497-2484209[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 7.9e-07 7e-05 23.5 1.3 1 23 166 188 166 188 0.98

2 11 2e-05 0.0018 19.1 4.5 1 23 194 216 194 216 0.98

3 11 0.00024 0.021 15.7 4.0 1 20 222 241 222 247 0.93

4 11 2.1e-07 1.9e-05 25.3 1.4 1 23 330 352 330 352 0.99

5 11 0.00023 0.021 15.8 2.0 1 23 358 380 358 380 0.97

6 11 3.3e-06 0.0003 21.5 1.5 1 23 386 408 386 408 0.99

7 11 0.00056 0.05 14.5 0.7 1 23 415 437 415 437 0.97

8 11 1.3e-05 0.0012 19.7 0.5 1 23 445 467 445 467 0.97

9 11 0.00035 0.031 15.2 0.6 1 23 473 495 473 495 0.98

10 11 1.5e-07 1.4e-05 25.7 1.5 1 23 501 523 501 523 0.98

11 11 0.21 19 6.4 4.2 1 23 529 552 529 552 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	7.9e-07	7e-05	23.5	1.3	1	23	166	188	166	188	0.98
2	11	2e-05	0.0018	19.1	4.5	1	23	194	216	194	216	0.98
3	11	0.00024	0.021	15.7	4.0	1	20	222	241	222	247	0.93
4	11	2.1e-07	1.9e-05	25.3	1.4	1	23	330	352	330	352	0.99
5	11	0.00023	0.021	15.8	2.0	1	23	358	380	358	380	0.97
6	11	3.3e-06	0.0003	21.5	1.5	1	23	386	408	386	408	0.99
7	11	0.00056	0.05	14.5	0.7	1	23	415	437	415	437	0.97
8	11	1.3e-05	0.0012	19.7	0.5	1	23	445	467	445	467	0.97
9	11	0.00035	0.031	15.2	0.6	1	23	473	495	473	495	0.98
10	11	1.5e-07	1.4e-05	25.7	1.5	1	23	501	523	501	523	0.98
11	11	0.21	19	6.4	4.2	1	23	529	552	529	552	0.96

Sequence Information

Coding Sequence: ATGGGTTACAAGATTATGGAAGAGAAGGGGGAAGTCTTAATGAAAGAAGAACATGACATTGCAGAAAGTAACGTACTTGAAGTTTCATCAGAAGTATGCGCTTCATATCAGCCATTTGCTTCTATCGACTGTAACAATCTGAATTTTTCTGAAACAGGTTGCAAAGATGTCGGTTTGGAACAGGAAGATATAAAAGATGTAACCAGTTACAATTATGGGACTTCTATGttgtttgaaaatgaagataaaATAGGCATAGAATCATCAGATGATACGAAATGCATCTCTTTAATAACAACGACTGATTTTTCGATCAATTATGGGACTACAGAAAATTCTAATCCAAGTCCCATaacaaaaagaaggaaaatgaggatggaattaaatgaaaaagacGAAAGTAACAGTTTAGTGTACAGTAATGAATGCAATAACACATTAACAGTTGGTGATAGTCTAGGAAGACATCTTAACACTCGACTTGAAATTTTACGGTTTACATGTAAAGAATGTAGCCGagaatttgctaacaaagatctTCTACGAAAGCACATCAGTACGCACAGTCTGGTTGCGAGATTTCCATGTGACGAATGCGGGAAGATGTTCAAATATAGACACCACGTAGAAAGGcataagaaaatacataaaaCTGAAGGACCTTATAAATGCAATATCTGCAATAAGACATTTAAACTACTCAGAACATTGAAAAGACATTCTGAAACGTGCCTAACACATTCCGACATAGAATCATCAGATGATATGAAAAGCATCTCTTCAAAAACGACGACTGATTTTTCAATCAATTATAAAGCTACAGAAAATTCTAATCCAAGTCCCATAACAAAAACAGGGAAATTGGAGATGGAGTCGAATGAAAGAGTTAAAACTGATTGCTCAGTGTACAGTAACGAATGCAATAACACATTAACTCTTCATGATAGTGTAGAAAGATATCTGGACACTCATCCTGTGAATTTACCCTTTAAATGCAAACAATGTGATCGACGATTTGCTAACGAGGATCTGCTCCAAAAGCATATCAATACGCACGGCCCAGTTGGAAGATTTCCTTGCGATGAATGCGGGAAAATGTTCAAGTATAAATGCTATGTAGAATTGCATAAGGCAACGCATAAAACTGAACGACCTTACAAATGTGATATCTGCAATAAGGGGTTTAAAGTACGCAAAGGATTACGAAGACATAAGATAACACATACAAAAAGGGAGGCTAAATACGTTTGCGAGATATGCGACAGAGCTTTCACCGAAATGCGGTGTTTGAATGATCATAAGGAAATCCACGTTTCTCCCGACAACAGAAAATTTATCTGCAAAGTCTGCGGTAAGTCGTTCGGTTTGGAAAGGAGCCTAAAGAAACACGTGAAAATTCACAACAATGATAAACCTTATATTTGCACCTATTGCGAGCGGGGTTTTAGGTATAAATGGATTCTAAAGAAGCACATTTTGATCCATACGAATGAGAAGCCGTTTTCTTGCGAAGTATGCGAGAAAAGATTCCGCCAAAAAGGAACATTACTGAATCATATGCGAACACATACTGAGGAAACCCCCTACCTGTGCAAACTGTGCCACACCTTTTTGCAATCCTCACGTCGACTTTTGACTCATATGAGAAAGATGCATGGGGCAGAATGCCGGGAGCAAGTGAAACATGAGGAAGAAGACGTTCAATTAGGTTAG
Protein Sequence: MGYKIMEEKGEVLMKEEHDIAESNVLEVSSEVCASYQPFASIDCNNLNFSETGCKDVGLEQEDIKDVTSYNYGTSMLFENEDKIGIESSDDTKCISLITTTDFSINYGTTENSNPSPITKRRKMRMELNEKDESNSLVYSNECNNTLTVGDSLGRHLNTRLEILRFTCKECSREFANKDLLRKHISTHSLVARFPCDECGKMFKYRHHVERHKKIHKTEGPYKCNICNKTFKLLRTLKRHSETCLTHSDIESSDDMKSISSKTTTDFSINYKATENSNPSPITKTGKLEMESNERVKTDCSVYSNECNNTLTLHDSVERYLDTHPVNLPFKCKQCDRRFANEDLLQKHINTHGPVGRFPCDECGKMFKYKCYVELHKATHKTERPYKCDICNKGFKVRKGLRRHKITHTKREAKYVCEICDRAFTEMRCLNDHKEIHVSPDNRKFICKVCGKSFGLERSLKKHVKIHNNDKPYICTYCERGFRYKWILKKHILIHTNEKPFSCEVCEKRFRQKGTLLNHMRTHTEETPYLCKLCHTFLQSSRRLLTHMRKMHGAECREQVKHEEEDVQLG*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -