Tdic019218.1
Basic Information
- Insect
- Trypoxylus dichotomus
- Gene Symbol
- -
- Assembly
- GCA_014905495.1
- Location
- BNES01000105.1:2485642-2490582[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.3e-05 0.0012 19.7 1.5 1 23 225 247 225 247 0.98 2 14 0.00073 0.065 14.2 5.8 1 23 253 275 253 275 0.94 3 14 4.7e-05 0.0042 17.9 1.0 1 23 281 303 281 303 0.98 4 14 0.00025 0.022 15.6 1.1 1 23 310 332 310 332 0.98 5 14 2.3e-06 0.00021 22.0 2.4 1 23 473 495 473 495 0.98 6 14 2.5e-05 0.0022 18.8 3.8 1 23 501 523 501 523 0.97 7 14 0.0005 0.044 14.7 0.3 1 20 529 548 529 550 0.93 8 14 0.0016 0.14 13.1 2.5 2 23 562 583 561 583 0.94 9 14 6.2e-06 0.00055 20.7 1.4 1 23 589 611 589 611 0.96 10 14 0.00099 0.088 13.8 1.6 1 23 618 640 618 640 0.97 11 14 7.7e-06 0.00069 20.4 2.1 1 23 648 670 648 670 0.98 12 14 0.0024 0.22 12.5 3.9 1 23 676 698 676 698 0.98 13 14 2.6e-06 0.00024 21.9 1.4 1 23 704 726 704 726 0.98 14 14 5.6 5e+02 1.9 3.0 1 23 732 755 732 755 0.91
Sequence Information
- Coding Sequence
- atggtGCTTCAATCAAACATAGAGTTACATCAATGCCTTCAGAAGATTACGGAAGAGAAGAGAGAGACATTAATAAAACAGGAACATATTGCTGTAGAAAATAACTTATTTGATGTTTCCTCAGAAATATGCACTTCAAATCAACCATTTGTTTCTATTGACCATAATAATTTGAATTCTTCTGGAACGGCTCACAACGTTATGGAAGAGAAGACAGAGGTGTTAATAAAGAAAGAGAATTATGTTGTAGGAAATAACTTAGCTGAAGTATCCACTTCATATCAACCATTTTCTTCTGTTGACTgtagtaatttgaatttttctgAAGCAAGGTGCAACGGGGTAGCCTTGAAACAGGATAATATAAAAGGTGTAACAAATTCTAATTGTGAGACATCTATGgcatttgaaaatgaaaataaaaaattagatttAGAATCAACAGATGATACGAAATGCATCTCTCTAATAAAAACGACTGATTCTTCCATCAATCATGAAGCTACAGAAAATGACAATCAAAGTCGTATGGAAGTAACAAAGAAACTGAAGATAGACTTGAATGAAAAAGGTAAAAGTCACAGTTTACAGCACAATAATGAATACAACAAGACATTAATGCTTCGTAATAGTCTAGGAAGATGCCCTGACACTCGACCTGGAAATTTACCCTTTAAATGCAAAGAATGTGATCGACgatttgctaaaaaaattcttcttcAAATGCATATCAGTAGGCACAACCTAATTGCAAGACACCCTTGCGACGAATGTGGGAAGATGTTCAGGTATAGATGCCACCTAAAAATGCATAAGGTGATACATAAAACTGAACAACCTTACAAGTGCGATGTCTGTAATAAGACGTTTAAAATACTCAAAGGATTGCGATTGCATCAAAAGGCGCATATTGAAAGGGAAGCTAAGTACGTTTGTGAGACATGCAACAGAGCTTTCACCAAGGTCATGTATTTGAATAATCATAAGAAGATTCACGTTTCACCCGATAGATGGAAGTTTATCTGCAAAACCTGCGGGTCTTCTGAAACGGGTTGCAAGATTATGGAAGAAAAGGGAGAGGTGCCAATGAAAGAAGAACATGACATTGTAGAAAATACCTTACCTGAAGTTTCTTCAGAAATATGCAATTCATATCAACCATTTGCTTCTATCGACTGTAGTAATGTGAATTTTTCTGAAACAGGTTACAAAGGGGTCAGTTTGAAACAGGAAGATATGAAAGATATAACTAGTTACAATTATGAGACATCAATGCcacttgaaaatgaaaataaagtagaaCTAGAATTAGAGACGACTGATTTTTCAGTCAATTATGGGGCTACAGAATATAACACATTAACGGATGGTGATAGTCTGGAAAGTTGTCCTAACACTCGACCTGGAAATTTAGCCTTTAAATGCAAAGAATGTGATCGACGATTTGCTAACAAGGATCTTCTCCGGCAGCATACCAGTAGGCACGGCCTGGTTGCAAGGTTTCCTTGTGATGAATGCGGAAAGATGTTCAAATATAGACACCACGTAGAAAGGCATAAGATGATACATGAAACTGAAGGACCTTACAAATGCGATATCTGCAGTAAGACGTTTAAACTACTCATAGCACTGCGGAAACATTCTGAAACATGCCCATCACAAACTGAAAAGGAAGCTAAAATTCCTTGTGACGAATGTGGAAAAATGTTCAAGTATAGATGCCACGTAGAATGGCATAAGGTGAAACATAGAACTGAACGACCTTACAAATGCGATATCTGCAGTAAGACGTTTAAACAACTCGTAACATTGCGAAGACATAAGGTGATACATACCGAAAGGGAAGCTAAGTATGTTTGCGAGGTATGTGACAGAGCTTTCATCGATATCCGGTGTTTTAAGAGGCATAAGACGATTCACGTTTCACCCGATAGCAGAGATTTTGTCTGCAAAACCTGCGGTAAGTCGTTCCGTTTGCAAAGTATCCTAAAGAAACACATGACTACTCACAGCAATGATAAACCTTATGTTTGCACGTATTGCGAGCGAAGTTTTAGGTGTAAATATGTTCTAAAGAAGCACCTTTTGATCCACACGGATGAGAAACCATTTTCGTGCGAGGTGTGCAAAAAGAGATTCCGCCAAAAGGGAACTTTATCGGATCATATGCTAATGCATACCCAGGAAACCCCCTACCTATGCAAACTGTGCCACACCTATTTGTTATCTGCGCGTCGGCTCATGACTCATATGAGAAAGATGCATGGGAAAGAGTTCCAGGATCAAGTGAAAGAAGAGAAAGAGGACGTTCCATTAGATtag
- Protein Sequence
- MVLQSNIELHQCLQKITEEKRETLIKQEHIAVENNLFDVSSEICTSNQPFVSIDHNNLNSSGTAHNVMEEKTEVLIKKENYVVGNNLAEVSTSYQPFSSVDCSNLNFSEARCNGVALKQDNIKGVTNSNCETSMAFENENKKLDLESTDDTKCISLIKTTDSSINHEATENDNQSRMEVTKKLKIDLNEKGKSHSLQHNNEYNKTLMLRNSLGRCPDTRPGNLPFKCKECDRRFAKKILLQMHISRHNLIARHPCDECGKMFRYRCHLKMHKVIHKTEQPYKCDVCNKTFKILKGLRLHQKAHIEREAKYVCETCNRAFTKVMYLNNHKKIHVSPDRWKFICKTCGSSETGCKIMEEKGEVPMKEEHDIVENTLPEVSSEICNSYQPFASIDCSNVNFSETGYKGVSLKQEDMKDITSYNYETSMPLENENKVELELETTDFSVNYGATEYNTLTDGDSLESCPNTRPGNLAFKCKECDRRFANKDLLRQHTSRHGLVARFPCDECGKMFKYRHHVERHKMIHETEGPYKCDICSKTFKLLIALRKHSETCPSQTEKEAKIPCDECGKMFKYRCHVEWHKVKHRTERPYKCDICSKTFKQLVTLRRHKVIHTEREAKYVCEVCDRAFIDIRCFKRHKTIHVSPDSRDFVCKTCGKSFRLQSILKKHMTTHSNDKPYVCTYCERSFRCKYVLKKHLLIHTDEKPFSCEVCKKRFRQKGTLSDHMLMHTQETPYLCKLCHTYLLSARRLMTHMRKMHGKEFQDQVKEEKEDVPLD*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -