Tdic018521.1
Basic Information
- Insect
- Trypoxylus dichotomus
- Gene Symbol
- -
- Assembly
- GCA_014905495.1
- Location
- BNES01000095.1:730173-739885[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 5.7e-06 0.00051 20.8 1.3 1 23 274 296 274 296 0.98 2 24 0.0053 0.47 11.5 0.3 1 23 301 323 301 323 0.96 3 24 8.3e-05 0.0074 17.1 4.7 1 23 328 350 328 350 0.96 4 24 0.57 51 5.1 0.0 1 19 358 376 358 378 0.91 5 24 0.0025 0.22 12.5 0.7 2 23 387 408 386 408 0.95 6 24 3.8e-05 0.0034 18.2 0.2 1 23 414 436 414 436 0.95 7 24 6.8e-05 0.0061 17.4 0.3 1 23 442 464 442 464 0.97 8 24 0.0022 0.2 12.7 3.1 3 23 913 933 911 933 0.94 9 24 6.7e-05 0.0059 17.4 0.5 1 23 939 961 939 961 0.96 10 24 3.3e-05 0.0029 18.4 1.5 1 23 966 988 966 988 0.97 11 24 0.048 4.2 8.5 3.4 1 23 993 1015 993 1015 0.90 12 24 0.38 33 5.6 0.1 1 19 1023 1041 1023 1043 0.90 13 24 0.00087 0.078 13.9 0.7 2 23 1052 1073 1051 1073 0.95 14 24 1.5e-05 0.0013 19.5 0.3 1 23 1079 1101 1079 1101 0.98 15 24 8.2e-05 0.0073 17.2 0.4 1 23 1107 1129 1107 1129 0.97 16 24 8.9 7.9e+02 1.3 0.5 12 23 1369 1381 1365 1381 0.89 17 24 6e-05 0.0054 17.6 2.8 1 23 1406 1428 1406 1428 0.98 18 24 0.1 9.1 7.4 0.2 1 23 1442 1464 1442 1464 0.95 19 24 0.00016 0.014 16.3 0.6 1 23 1469 1491 1469 1491 0.98 20 24 8.5e-05 0.0076 17.1 0.3 2 23 1500 1521 1499 1521 0.96 21 24 0.00066 0.059 14.3 0.2 2 23 1528 1549 1527 1549 0.92 22 24 0.009 0.81 10.7 2.2 1 23 1555 1577 1555 1577 0.95 23 24 3.3e-06 0.00029 21.6 2.4 1 23 1583 1605 1583 1605 0.97 24 24 0.02 1.8 9.6 5.5 1 23 1611 1633 1611 1633 0.97
Sequence Information
- Coding Sequence
- ATGAATTCAGATATTTGTCGCACTTGCTTGCAAAGTAATTCcgaatattacaatttatttaattattttgaagacGGTAAACAGCTACTGGAAATGTTGATAGATTGTACTGGCATAAAAGCGGAGGAAGGTGACCAGTTACCCTACAATATATGTGTTGGCTGTAAAGAAAAACTCTTCTCTTCATGGTCCTTCAGAGTATTGGCATTAAACTCTGATTCAAAATTACGTGAGGATTGTAACGATAAAGTATTTGCTGAAGTAGAAGTTAAGGATGAGCCTATTATTAGGCAATATGACGACGGTAACAAATCAATAACAGCAATACATGTGAAGTATCTCACCTTTGGAACAGGTACTGTGAGAGATCAAGAACTGCAAAGTACACAGAAGCGATATCCAGGACTAGTTTTAGTTATTAGCAATGATTTGATTAACCAAGCTTTACTAAAAGCGGGTTTTCAAACAAATCTAAGTAAATATCCAGATAAAAGCCTGCACGATGACAATTCCAACACTGAGAAATGCTCGCCTGAATATCAACAGTTAGATGGTATTAgAAACAAAAAGCAAATAGAAACATCACAAGCTGTAGAGGACGTTGTATGTAAAACAGATGATACTGTCTCTGTGAAGTCCGGATATGTAGATGGCACGAGTCATTTCGATGATAATTCTGTAGTGATACCCAATATTGAGCCTATTTCAAGTAATGAAAACGATAATTTGTCACTTGATGAATCGGATAAGGAACAAAATGGAAATGATGCAATGCCAAACAGCTACAACCATCTGGCTTATCCTGAGGGTAAGGTGAAATTCAGGTGCAAAATTTGTAAGAAACCCTTTAAGAATGATTATCAACTGGAAAAACATCAAGCGGTACATCAAAATGATGAATACATATGTGATATTTGTGGCGAAAGTTTCGAAACATTTTGGAAGAAACGTAATCATCGAGCCATTCACAGAGGGCAATTTCATGCTTGTCACCTCTGCGATCGAACATTTAAGCGCAAAAAGAGTCTTGAGGAGCATCTGGAGCGACACAATCAAAAGAAAGAGCGTGATTACGTTTGTGAACTGTGCGGAAAAATCTTACAAGGGTTAAGCAGTTTGAGAGGCCATTTCGCCTGTCACATGTCCGAGAAGAGGTTCCTATGCGTAACATGCGGTAAAGGTTTCCCCACCCAAATGCGGCTGAGTATACACAAACGACGACATTCCACTCTAAAACAGTTTTTGTGCAAGGAGTGCGGAAAGGCATTTTTGGGGCCGAGCGAATTAAGAAGACACATGTTGATGCACACTGGTGAAAGGACTCATCCATGCAAGATTTGCGGGAAATTGTTTGGTGATTCTTCCACGATAATAAGACATATGCTGATCCACACTGGGGAAACCCCGTTCGAATGTACCAAATGTCCGTACAAGTGTAGGACTTGCTTAAAAACAGGAACcaactattttaatttgttcaatTATTTTGAAGACAGTAAAGCCTTATCAGAGATGCTAATGGAATGTGTAACAATAAAGGTAAAGGAAGGTGATGGTTTGCCATATCACATATGTAACAATTGTAGAAACAAATTAAACTCTTCCTGGGCTTTCAGAACATTGGTATTGAGATCAGAAGTAAAGTTACATAGTAATATTGAATCTCATTTATTATCTGATAATGCAGTTTTTGAAGAAGAAGCATCAGTTTGTAGAGATGAGAAAGTTGAATACAACAGCAATGTAGTTGAAAGCgccaacaataataattataatagaagAGTAGAACAATCAAAATGTTTACTTTCAGAAACGTTAGATTTTATACCATCACTAAGTCATACTGATAAGAACGTAACTCAAAAAAATAAGGCAGTAATAGAATCTATTTACAAGAATAATTGTGTGACcattaaagatacaataaaagagCATTGCGAAGAGAAAATTGTAGGCACTTCATATAACTTAGATTGtacaaaagataattttgatcagttttctaaacataaGTCAATTGGAACTAGAGCACTGTATTTGAAAAAGGAACTAAGTAATACAgacgacaaaatattagaatctCAAAATGTTGAAGATTGTCAAACTAGTGAAACTACTATTGAAAGTGATACAAAGTCAACACCACCATCAAAATTAGTTAAGAGACAAAGACAGAGATATCAGATGAACCACAAAAATGAAAAGTTTTCATCTAAACTTTGTAAGACATCAGTTTTTGCTAAAGAGGCAGTTACCAATAAGTCGGTAATTGCAGCAGCTGCGGATCCTTCTAATACATCAAAAGAAACAAGTATTGTGAGAGATCTTGAACTAGAAAATATGAAGAAGCAATACCCAGGGATGATTCTAGTTATTAGCAATACTCTGGTTAACcaagggttccaaacaggctcAAGTGAATGTCTAGATAAAGATAAttctaaaattatgaaaaattcgGTGGAGTATCAACAATCAGGTGTCGAAGCTAACTATCTGGACAATAAAAAGCAAGTCGAAATATTACAAACTAAAGACGACATCGTACGTGAATCAGatgatagttttataaaatctgAATATGTGGATAATCTAAATGCTTCTGCTGATGTTTTTATAGTGGATGATGAATCTGTTTCAAGTAATGACAAAAATAATCTATTGCTTCATGAATTAGATACGAAACAAGGTGGAGATGATGCAGCTCAGCAAGAAGTAGAAATATCTAAAGTACACTGCAAAGAATGTGACAAATTTTTTTCGCGAAGCTACTATAACCGAGTCCACCTATATTATCATCAAGGTAAGCTAAAATACGCGTGTAAAGTTTGCAACGAATCTTTCAAGAACGATTACCAACTGGAAAAACACAAGGCGGTACATCAGAACGAAAAACACGTTTGCGAAATTTGTGGCAAAAGTTTCGTAACGTACTCGATGAAACGTGTTCACCGAAGGGTGCATAAGAACGAATCCCACGCTTGCCATCTCTGCGATCGAACGTTTAAACGCAAGAAGATCCTCGACGATCATCTGGAGCAACACAATCGGAAAAGGACGCGCGATTACGTTTGCGAATTGTGCGGAAAACTCTTTCAAGGATTGAGGAGCTTAAGAGGCCATTCCGCCTGCCATATCACAGAGAAAAGCTTCTTGTGCGTTACGTGCGGTAAAGGTTTCCCCACCCAAATGCGATTGAGTATGCACCAGCGCCGGCATTCTACTCTAAAACGGTTTTCGTGCAAGCAGTGCGGAAAGGCATTTTTGGGGCCGAGCGAATTAAAAAGACACATGTTGATGCACACCGGTGAAAGGACTCATCCGTGCAAGATCTGCGGGAAATTGTTCGGTGATCGTTCTACAATAATAAGACATATGCTGATTCACACCGGGGAAACCCCGTTTGAATGCGCTAAGTGTCCGTACAAGTGTAGAACTTGTTTAAAAAGAGGCACGgactattttaatttatttaattattttgaggaTACTAAAGCTTTATCGGAATTGCTAATGGAATGTGCGACAATAAAGATAGAGGAAGGTGATGGCTTGCCGTATCACATTTGTAACGATTGTAGAGGCAAATTACACTCTTCATGGGCTTTCAGAACATTGGTGTTAAGATCAGAAGAAAAGCTACGTAGTAACATCAGTCTAGGTGTATCACATGATAATGCATTTGTTAAAGAAGAACCATTAATTGGTAGAGATGAAAATGTTGAGCTGATCAGTACTGTTATTGAAAATGCAAATTGTAATAATGGTAAAAATAATAGAGAAGTAGAGCAATCAAAATGTTTAGATTTGCAAATGTTAGATTTTACTCCAATCAAAAAGGATGTCGATGAATGTTCGGATAAAGCTATTTATAAAAGTAGTGATATAAAGGTCGCAGATCACTATCAACAAAGCATAGATTCATCATGTAACTTACATTACACTGACAATAATTTTGGTCAGTGTCCTAGTGATAAACCAACAGAAATTAAAACATTGCATTTGGAAGAAGGTTTAAATGATATAGAAAACAAACTGCCAGTAGAACATCATAACTTTGAAAATTATCGAAACAGCAAAGATGAAAATGATGTAAAATCAATATCATCGTCCAAATTAGTTAAACACCGAAGGAAAAGACATCAAGCGAAGAATGAAAAGCCTTTAACTAAAGTTTGTAGGACCacaatttcacaaaaatatcatcaaaaagaatttaattgtaaaatttgcaATCAAACTTTTGATTCCTTGTACTATTTAAAAGAACATAGAAAAACACACAAACATCAAAGGCCTAACATTGGTGAGCGAAATAAAAAGTTCATTTGCAAGATTTGTGGAGAAGATATGCAAACACAGTATAAATTATCAAGTCATCAAGCAGCGCACAATGGCGAACTCTACGAATGTCAGATTTGTAAAAGAACATTTCCGCTTAAACAATCGTTGATTGCACACGAAAAACGTCACGTATGCGACGCAGAATCGAGACTGATATGCGAACTGTGCGGCAAATCGTTCGCGAACATATACACATTGAGATATCATCGGGAGACTCACAACACTGAGAAAACTGTACCTTGCCCGACGTGTGGCAAGCTATTTACGACCCAAAAGAATATGATGTCACATTTCGCGTGGCATAACATTCGTGACCGTCATATTTGCGAATATTGCAATAAAGGCTTTAAATCGGCGAATCGAAAAAAACGACATGTTTTGATACACACCGGGGAGAAACCACATCCATGCAAGATCTGCAACAAAAGATTTACGGATACTGGTACACTCTCGCGTCACATGCTTACCCACACGGGGGAAACCAAGTTTGCCTGCGATAAATGTCCGTATAAATGCAGATATAAACAGCAGTTTGATAAACATTTAAGAAAGcataaatag
- Protein Sequence
- MNSDICRTCLQSNSEYYNLFNYFEDGKQLLEMLIDCTGIKAEEGDQLPYNICVGCKEKLFSSWSFRVLALNSDSKLREDCNDKVFAEVEVKDEPIIRQYDDGNKSITAIHVKYLTFGTGTVRDQELQSTQKRYPGLVLVISNDLINQALLKAGFQTNLSKYPDKSLHDDNSNTEKCSPEYQQLDGIRNKKQIETSQAVEDVVCKTDDTVSVKSGYVDGTSHFDDNSVVIPNIEPISSNENDNLSLDESDKEQNGNDAMPNSYNHLAYPEGKVKFRCKICKKPFKNDYQLEKHQAVHQNDEYICDICGESFETFWKKRNHRAIHRGQFHACHLCDRTFKRKKSLEEHLERHNQKKERDYVCELCGKILQGLSSLRGHFACHMSEKRFLCVTCGKGFPTQMRLSIHKRRHSTLKQFLCKECGKAFLGPSELRRHMLMHTGERTHPCKICGKLFGDSSTIIRHMLIHTGETPFECTKCPYKCRTCLKTGTNYFNLFNYFEDSKALSEMLMECVTIKVKEGDGLPYHICNNCRNKLNSSWAFRTLVLRSEVKLHSNIESHLLSDNAVFEEEASVCRDEKVEYNSNVVESANNNNYNRRVEQSKCLLSETLDFIPSLSHTDKNVTQKNKAVIESIYKNNCVTIKDTIKEHCEEKIVGTSYNLDCTKDNFDQFSKHKSIGTRALYLKKELSNTDDKILESQNVEDCQTSETTIESDTKSTPPSKLVKRQRQRYQMNHKNEKFSSKLCKTSVFAKEAVTNKSVIAAAADPSNTSKETSIVRDLELENMKKQYPGMILVISNTLVNQGFQTGSSECLDKDNSKIMKNSVEYQQSGVEANYLDNKKQVEILQTKDDIVRESDDSFIKSEYVDNLNASADVFIVDDESVSSNDKNNLLLHELDTKQGGDDAAQQEVEISKVHCKECDKFFSRSYYNRVHLYYHQGKLKYACKVCNESFKNDYQLEKHKAVHQNEKHVCEICGKSFVTYSMKRVHRRVHKNESHACHLCDRTFKRKKILDDHLEQHNRKRTRDYVCELCGKLFQGLRSLRGHSACHITEKSFLCVTCGKGFPTQMRLSMHQRRHSTLKRFSCKQCGKAFLGPSELKRHMLMHTGERTHPCKICGKLFGDRSTIIRHMLIHTGETPFECAKCPYKCRTCLKRGTDYFNLFNYFEDTKALSELLMECATIKIEEGDGLPYHICNDCRGKLHSSWAFRTLVLRSEEKLRSNISLGVSHDNAFVKEEPLIGRDENVELISTVIENANCNNGKNNREVEQSKCLDLQMLDFTPIKKDVDECSDKAIYKSSDIKVADHYQQSIDSSCNLHYTDNNFGQCPSDKPTEIKTLHLEEGLNDIENKLPVEHHNFENYRNSKDENDVKSISSSKLVKHRRKRHQAKNEKPLTKVCRTTISQKYHQKEFNCKICNQTFDSLYYLKEHRKTHKHQRPNIGERNKKFICKICGEDMQTQYKLSSHQAAHNGELYECQICKRTFPLKQSLIAHEKRHVCDAESRLICELCGKSFANIYTLRYHRETHNTEKTVPCPTCGKLFTTQKNMMSHFAWHNIRDRHICEYCNKGFKSANRKKRHVLIHTGEKPHPCKICNKRFTDTGTLSRHMLTHTGETKFACDKCPYKCRYKQQFDKHLRKHK*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -