Tdic010160.1
Basic Information
- Insect
- Trypoxylus dichotomus
- Gene Symbol
- -
- Assembly
- GCA_014905495.1
- Location
- BNES01000033.1:437295-445515[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.0011 0.098 13.6 2.5 2 23 20 42 19 42 0.96 2 22 0.16 14 6.8 0.2 1 23 62 84 62 84 0.97 3 22 0.0011 0.098 13.6 4.2 1 23 88 111 88 111 0.97 4 22 0.001 0.09 13.7 0.5 1 23 116 139 116 139 0.96 5 22 0.074 6.6 7.9 2.2 1 23 145 167 145 167 0.94 6 22 0.039 3.5 8.7 0.8 2 23 174 196 173 196 0.93 7 22 2e-05 0.0018 19.1 0.7 2 23 208 229 207 229 0.98 8 22 4.4e-05 0.004 18.0 1.8 3 23 241 261 239 261 0.96 9 22 2.3e-05 0.002 18.9 3.2 1 23 267 289 267 289 0.98 10 22 0.0036 0.32 12.0 4.4 3 23 296 317 295 317 0.89 11 22 0.0017 0.15 13.0 0.7 1 20 323 342 323 344 0.95 12 22 6.2e-05 0.0056 17.5 0.5 2 23 374 396 373 396 0.94 13 22 0.13 11 7.1 0.1 1 23 416 438 416 438 0.97 14 22 0.00098 0.087 13.8 0.4 1 23 442 464 442 464 0.99 15 22 0.018 1.6 9.8 2.1 1 23 470 493 470 493 0.98 16 22 0.084 7.5 7.7 1.7 1 23 499 521 499 521 0.79 17 22 0.00052 0.047 14.6 0.4 3 23 529 550 527 550 0.91 18 22 3.2e-06 0.00028 21.6 1.2 2 23 562 583 561 583 0.98 19 22 8.9e-06 0.0008 20.2 0.5 3 23 595 615 593 615 0.96 20 22 2.7e-07 2.4e-05 25.0 1.7 1 23 621 643 621 643 0.99 21 22 4.3e-05 0.0038 18.1 4.4 1 23 649 671 649 671 0.97 22 22 0.00047 0.042 14.8 0.1 1 21 677 697 677 698 0.96
Sequence Information
- Coding Sequence
- ATGCTATTTTTCAGGCTCGCGTATCGACGGAAAAATCAAGTTCGAACTGTATCTTGGACGTGCAAAACTTGTTCCTTACAATTTACCTCGAGAAAATTGCTCAATCAACATAGCAGGACAAATCACGCTAAATTCTTCGGGGAATTCCACTACAATTACACCTACAATGAGGACGATGGAAATTACTCTTGCAAAACGTGCGATGTCGAGATGAGAAGCAGATACGAAATCGAGGAGCACGTTCAGATGCACGAGGAAAAATTCCAATGCCGGAAATGTAACCAGGTCTTCTATACGGCCTATCATTTCTCCGTTCACGCGAAGAGGCAACACGGAGACGACGTCTACAAATGTCCTTTGTGCAAGTACAGCACCTCTAGAGCGACGTCTATTTCGCAGCACATCAACCTCATGCATCTCAAGAAATACCTGCACAATTGCAAGTTTTGCGGTAAAGGGTTCCACGACGTTGCCGTCTTTAGGGAACACGAAAACGTCCATCTGGGAGCGGATCCTTTAACCTGCGTGGTCTGCAAGAAGAAATTCTTATATTCCAAGAACCTGCTCATGCATCAAGTTCGAATTCACACCGTTACGGTTTCCGGTGTCCTCCTATCTAATCAATGCTCGATATGTAGAAAGATATTTTCCAAACCGAACACCTTAGTATCCCACATGAAGATACATGAAAGGAAAAAGCCTTCTGAGAAAACTCACCTTTGCGATACCTGCGGGAAAGGATtcgcaagaaaaaataaattgatgttGCATTATCGAGTGCATACGGGATATAAGCCGCATAAATGTAGTTATTGCGAGAAATCTTTCACCAAAAGAGATTATCTAGTGCTCCATGAAAGGATTCATAGCGGTGAGAAGCCCTACTGCTGTATTTTCTGCGGGAAATGCTTCAACCAAGATACTGCTTTAAGGATCCATTTGAGAAACCATACAGGAGAACGACCTTACGTCTGCGAGTTTTGTAATAAGGGCTGTATTTCTAGGGCTTCCCTTAAAGTACACCAGACGAATTGCTCTGGGTTCTCCTATATTAGCCCCGGTTACTTCCAAGACGACGCCCAAACTTCAACGCAAGGCAACGCCGGACGGCGTGTTTGGACTTGTAAGGTTTGTGACGAGATGTTCGACAACAGAAAATCTTTAACACAACACAGAAATGAAGCTCATCTCCAAGCGTTTAGGGAAACTCACGCCAAATACCAGTACGATGAGAAAGGCGGCATCTACAATTGTAGAACTTGCGACGCCGAGAGTAAGACCGTCGAGGAAATGGAGACTCATATTTTGATTCACGAAGAAAAGTACACCTGTCCGGAATGCGACGACGTATATTTCTCCGCGCAAAAATTATCGCTGCACATGAAGAAGCATTGGGACGACGACCTGTACAGGTGTCCCCTATGCAAATACCTAACGCCGAGAAGAAGTTGCATGTCCATCCACATCAATACGACTCATTTAAAGAAGTACCTTTACTACTGCAAATATTGCGGAAGGGGTTTCCACGATCCGTTAATTTATAAGGAGCACGAGAATAATCATCAAGGCGCAGCGCCCATAACCTGCATAGTTTGCGGTAAGACGTTTTCATTTACGAGAAACCTGATCGTGCACCAAATTCGCAACCATAAAGTCACGATTCTCGGAATGAAATTGAAGAATCAATGCCCGTTCTGCAAGAAGACCTATTCGAAAGCCTCGACGCTTCAAAATCATATAAAGATCCATGATAAGAGTAAACCTCGACCGAAAACCCATCTTTGCGATATCTGCGGGAAGGGCTTCGCTCAAAAAGGTAAATTGATCCTCCACTATAGGGTCCATACAGGGTATAAGCCGTACAAATGTAGTTACTGCGGTAAATCCTTTACGAAAAAGGATTATCTGGTCATGCACGAACGCATTCACAGCGGGGAGAAGCCCTACTGTTGCGTCTACTGCGGAAAATGTTTCAATCAAGACGCTTCCTTGAGAATCCACGTCAGGAAACATACCGGTGAAAGACCTTACGTCTGCCAAATATGTCACGGAGGTTTCGTATCGAAGGCAGCCCTGAAAGTGCATATGAATAATTGTTCTGGATATTTTAAGTAG
- Protein Sequence
- MLFFRLAYRRKNQVRTVSWTCKTCSLQFTSRKLLNQHSRTNHAKFFGEFHYNYTYNEDDGNYSCKTCDVEMRSRYEIEEHVQMHEEKFQCRKCNQVFYTAYHFSVHAKRQHGDDVYKCPLCKYSTSRATSISQHINLMHLKKYLHNCKFCGKGFHDVAVFREHENVHLGADPLTCVVCKKKFLYSKNLLMHQVRIHTVTVSGVLLSNQCSICRKIFSKPNTLVSHMKIHERKKPSEKTHLCDTCGKGFARKNKLMLHYRVHTGYKPHKCSYCEKSFTKRDYLVLHERIHSGEKPYCCIFCGKCFNQDTALRIHLRNHTGERPYVCEFCNKGCISRASLKVHQTNCSGFSYISPGYFQDDAQTSTQGNAGRRVWTCKVCDEMFDNRKSLTQHRNEAHLQAFRETHAKYQYDEKGGIYNCRTCDAESKTVEEMETHILIHEEKYTCPECDDVYFSAQKLSLHMKKHWDDDLYRCPLCKYLTPRRSCMSIHINTTHLKKYLYYCKYCGRGFHDPLIYKEHENNHQGAAPITCIVCGKTFSFTRNLIVHQIRNHKVTILGMKLKNQCPFCKKTYSKASTLQNHIKIHDKSKPRPKTHLCDICGKGFAQKGKLILHYRVHTGYKPYKCSYCGKSFTKKDYLVMHERIHSGEKPYCCVYCGKCFNQDASLRIHVRKHTGERPYVCQICHGGFVSKAALKVHMNNCSGYFK*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -