Tdic010364.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Trypoxylus dichotomus
Gene Symbol
-
Assembly
GCA_014905495.1
Location
BNES01000034.1:471148-477476[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.0011 0.099 13.6 6.3 1 23 132 154 132 154 0.98
2 16 0.0011 0.1 13.6 7.5 1 23 160 182 160 182 0.97
3 16 6.4e-06 0.00057 20.6 0.8 1 23 191 213 191 213 0.97
4 16 0.00023 0.02 15.8 0.7 1 23 248 270 248 270 0.99
5 16 4.3e-06 0.00038 21.2 6.0 1 23 276 298 276 298 0.96
6 16 0.0022 0.2 12.6 5.0 2 23 319 341 318 341 0.95
7 16 3.1e-05 0.0027 18.5 4.3 1 23 408 430 408 430 0.97
8 16 1.8e-05 0.0016 19.2 1.7 1 23 436 459 436 459 0.95
9 16 5.3e-06 0.00047 20.9 0.2 1 23 464 486 464 486 0.98
10 16 5.8e-07 5.2e-05 23.9 0.9 2 23 495 516 494 516 0.97
11 16 6.7e-08 6e-06 26.9 1.4 1 23 523 545 523 545 0.97
12 16 2.9e-06 0.00026 21.7 1.2 3 23 557 577 555 577 0.96
13 16 0.0003 0.027 15.4 7.3 1 23 583 605 583 605 0.99
14 16 2.3e-06 0.00021 22.0 1.5 1 23 611 633 611 633 0.99
15 16 1.2e-07 1.1e-05 26.0 0.2 1 23 639 661 639 661 0.98
16 16 0.00018 0.016 16.1 0.1 1 23 667 691 667 691 0.92

Sequence Information

Coding Sequence
ATGATTAATAGTTGTGATAGAATTGTAATGGACAAATTATGCCGATCATGTATGTGTGAAAGCACGAACGTAAGAAACTTGTTTGAAGTTAAGGATGCACTAGGAGATCAGTCCCACCTTATAGCCGATATGCTTATGACTTGCGCTTCCGTCGAGataaCGAAAGGTGATCCTTTACCAAAAGTCATATGTGCACAATGCGAACTAAAACTTTCTGTTGCTTTTGAGTTCAAACAACAATGTGAAAAAACTGATGTTTCTCTTCGGGAGTTAGTACAGGGTGTAGgtgaagaaatagaaataaagcctgaagtaaattattataacgATGATGATAATGGCACTATATCTGAATCCGATGAATCAAATGCAAGTAAACATGAAAAGAAACTATTTCATTGTAAATTTTGTTCAAAAGGATTTCGATCAAAAAATGGTTATAAATCACACATGCAAAGgcataataatgaaaaattacatacttGCCATATATGTCaagagaaattttcaaaaagcaaTTTACATAAACATCTACAGACGGTACACAAAACCGATGCAGAATATAACACTCATACTTGTGATGAATGTGGTATAACTTTCCCTAAGGCGTATTTATTATCTAAGCATATGAAAGAGCATAAAAATCGAATTCTTGATGATGCAGGTGGAGATGATGTATCGGAATACTTAAAAGACAGTTTTTCCAATGGAGAAAATCAAGATAAATCAGATAATGATAAATATGAATGTAAATTTTGTAGTAAGGTTTTATCAACATATGTAGGTTTGAAAATACATGTGCGCAGACATACTGGTAGCAATTTGCATGCATGTGATGTATGCAAGAAAACATTTACCAAAAGTAATCACCTTAAGCGTCATATGCTAACACATGGGGTTAAAGCTGAAATAAAGAAGTCATCTGACAATAATGAAAAGGATAAAAAGATTATGCAGTGTGAATTTTGTGATCGGAAATTCAAATACAAGAAGAGCTTTAGTCAGCATATGCATAATGAACATGGAATATCAGATGAGAGTGATGTACCACTAAGTACGTTACTGGGAAAAAAAGATGAAGTTGAACGTAAGAAAGAAATTGCTGAACCTCAGAAAACAGATGAAACTAATGATGCTGAGGTAACTGATAATGATGTAAATCCGAATATCGATAGCATACCTGACCATGAATTCCTGATGATGACGAAACTCACTAAGTGCTACACATGTCACGTATGTAATGCCCAGTTTGTCCGATCCAATCATTTAACACGTCACATGACCTTGCATAAAGCAGTTTTGATACATAAATGCCATCGTTGTGACAAGGCTTTCGCAACGCCAGAATATCTGGCGAAGCACGTACAAGAAGATCACATTGACAAACCTTACACGTGCTCGATATGTGACAAGACGTACGCAAGAGGAGAACAACTGATCAGGCATTTGAAGGCGCACTTGAATCCGACCGAGCTCGATATCAAATGTTCGATATGTGACAAACAATTTACTAGATCTGATCAGTTAGCAAAGCATTTAAAATTACATCTGCAACAGGACAAACGTCATGTTTGCAGTGAGTGTGGTAAAGCTTTTAATAGGTTGGATAATCTAAAAACGCACCAAAGGATACACACTGGGAAGAAGGATAATTCCAAATTACACCTTTGTGTTTATTGTGGAAaggaatttaataattcaagtaaTATGATAGTTCATATAAGAAGACATACCGGTGAAAGACCGTACAAATGCAGTCATTGTGGTAAGGGATTTCCCCGTTCGCATGATCTCAAGTGCCATGAAAGGACGCATTCAGGAGAGAAGCCTTACACGTGCACCTTATGCGGAAAAGCCTTTAATAAGAGTAATAAATTGCTTAGACATACTCGTGTTCATACTGGTGAACGTCCATACGCTTGCAACATATGCGGTAGGGCATTCACGCAGTCGAACGATCTTGCCTTACATATGCGCAGGCATACCGGTGCCAGACCGTACGCTTGCGGGATGTGTCCTGCTCGGTTTATACAATCGGGACAGTTGAAAGCGCACAGAAGATCCACAGGACACTGGATGGAAACACAACCGGATTTGAAAGGCGGCCATCGGGTTGAACCGGTGGTCTCGCTATCGGATCCGGTACCTATCAAGTTCAAAACGCACGGTAAGAAGAAGCTGGAAGAAGAAACACAGGTGCAAGAGACGAAGGTATCCCAATCAGACCATAATTCCGTCGACGCTGTAATGCAGCCAACCGTTATGGAAgacacaaaattaatttcgcCATATGCATCGGGCGATATAATGACTTTTaacgctacacgagaaaacgtggacgAATTGAACGAAAGAATCAAAAACGAAGTACAATATAACTGCGCCAATAGTAATGTAAATAGTGATAATAAGGAGCAGGACACATTCCAAATTTACAGTACGAATCCGCCTACTTCGACTACATACACTTATAACACATACCAATCGTTCGGATAG
Protein Sequence
MINSCDRIVMDKLCRSCMCESTNVRNLFEVKDALGDQSHLIADMLMTCASVEITKGDPLPKVICAQCELKLSVAFEFKQQCEKTDVSLRELVQGVGEEIEIKPEVNYYNDDDNGTISESDESNASKHEKKLFHCKFCSKGFRSKNGYKSHMQRHNNEKLHTCHICQEKFSKSNLHKHLQTVHKTDAEYNTHTCDECGITFPKAYLLSKHMKEHKNRILDDAGGDDVSEYLKDSFSNGENQDKSDNDKYECKFCSKVLSTYVGLKIHVRRHTGSNLHACDVCKKTFTKSNHLKRHMLTHGVKAEIKKSSDNNEKDKKIMQCEFCDRKFKYKKSFSQHMHNEHGISDESDVPLSTLLGKKDEVERKKEIAEPQKTDETNDAEVTDNDVNPNIDSIPDHEFLMMTKLTKCYTCHVCNAQFVRSNHLTRHMTLHKAVLIHKCHRCDKAFATPEYLAKHVQEDHIDKPYTCSICDKTYARGEQLIRHLKAHLNPTELDIKCSICDKQFTRSDQLAKHLKLHLQQDKRHVCSECGKAFNRLDNLKTHQRIHTGKKDNSKLHLCVYCGKEFNNSSNMIVHIRRHTGERPYKCSHCGKGFPRSHDLKCHERTHSGEKPYTCTLCGKAFNKSNKLLRHTRVHTGERPYACNICGRAFTQSNDLALHMRRHTGARPYACGMCPARFIQSGQLKAHRRSTGHWMETQPDLKGGHRVEPVVSLSDPVPIKFKTHGKKKLEEETQVQETKVSQSDHNSVDAVMQPTVMEDTKLISPYASGDIMTFNATRENVDELNERIKNEVQYNCANSNVNSDNKEQDTFQIYSTNPPTSTTYTYNTYQSFG*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-