Tdic010172.1
Basic Information
- Insect
- Trypoxylus dichotomus
- Gene Symbol
- -
- Assembly
- GCA_014905495.1
- Location
- BNES01000033.1:558650-581888[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.0075 0.67 11.0 2.0 1 23 268 291 268 291 0.96 2 20 3.5e-05 0.0031 18.3 2.0 1 23 307 329 307 329 0.98 3 20 1.9e-06 0.00017 22.3 0.6 2 23 335 357 334 357 0.96 4 20 3.5e-05 0.0031 18.3 0.5 1 23 364 386 364 386 0.98 5 20 0.043 3.8 8.6 1.5 1 23 392 415 392 415 0.96 6 20 4.1e-05 0.0037 18.1 0.6 2 23 421 442 420 442 0.96 7 20 9.4e-06 0.00084 20.1 0.1 1 23 451 473 451 473 0.98 8 20 6.3e-07 5.6e-05 23.8 0.7 1 23 478 500 478 500 0.98 9 20 4.6e-06 0.00041 21.1 0.8 1 23 505 527 505 527 0.98 10 20 0.27 24 6.1 0.9 1 17 533 549 533 550 0.84 11 20 0.0013 0.12 13.4 0.1 1 20 563 582 563 584 0.96 12 20 1.4e-06 0.00012 22.7 0.4 2 23 622 644 621 644 0.96 13 20 3.1 2.7e+02 2.8 0.1 9 19 651 661 649 665 0.86 14 20 0.00027 0.024 15.6 1.1 1 23 671 694 671 694 0.97 15 20 0.00025 0.022 15.6 0.4 2 23 700 721 699 721 0.96 16 20 5.7e-05 0.0051 17.7 1.6 1 23 730 752 730 752 0.95 17 20 0.0029 0.26 12.3 0.3 1 23 757 779 757 779 0.98 18 20 8.5e-06 0.00076 20.3 1.3 1 23 785 807 785 807 0.95 19 20 9.4e-05 0.0084 17.0 6.3 1 21 813 833 813 835 0.95 20 20 0.00029 0.026 15.4 1.4 1 23 841 863 841 863 0.98
Sequence Information
- Coding Sequence
- ATGGTGAGCATAATGGAAATTATGCAATTGTGTCGACTGTGTCTGGTCAAGGAACAAGTGAACGTGCCGATTTTCGACGAACAGGACGATATTAGGCAGATATGCTTAAAAATCACGGCTTGTTTGCCGGTCAAGGTTTCAAAAGAAGACAAATTACCCAAAAAGATTTGTGATGGTTGCCTGTACAAGCTAGAATTACTATACCAATTTTATAATTCGGCCGCGAGCGCGGAGAAGCAACTACTATCCTGGATCGAGCAAGCGAAAATGGACTCGAAGAACGCAGGTGGTGATCTTGCGACGCAACCGCAAGCGACCGTCAAGCAGGAGAAACTCGAACCTGTCGAAAGTACAAACGAAACCCCGGAACTATCGAGCGACGCGCAGAGTTACATCCTACAACAGCAACAATTACAGTACGAATCAGATTTCGCATTCAAAGAATCTCAGGGTTCGAACGCAGATGGAACCGCATCGAACGCATCTGCAAATTCCGATGAACCGATAGCAAAAAGACCGAGACGAAGGCGACAAGCCACGAAGCCTATACCACCTGAAGCAATAGAATCGAGTGATGATAATGATGCTGGAGATTCTATGATGGAAATGACTGTAACCAAGACTGAAGAAGAAAGCGAAAGTGAAGGTGACGAAAACGTTGATGATCCAGAACCTACGAAATACGTGGCTGTTGGCGATGATGCCGAACAACCAGGACCTTCCGGCTTAGGAAAAGGAAGCGCAGATGCACCGTTCTCGAATGCTGAAGTGGGGCAACTGCAACCCCTTTTTGAAGATACATACGAATGCACTGAATGTTTGCAACTCTTCGTATCACGTTATCAATTATTCACGCACCAGTTTAAGAACCACAAGCATCTCCTCGATCTTGGAGAATTCGTCGAGGAGAAGGATTCCTACACTTGCGAAGAATGCGGCAAAGTTTACCGTAAACTCGAATAttttaacaaacataaaaaggaACACCAGGAAGGCGATAAAACGTGTGAAATCTGTAATAAATCATTCAAAACTAAAGTTTATTTGGCCACACACATAAAGGTGATACATGAAAGAAAGCAAAGCGATTTTGTTTGCGATCTCTGCGGGAAAACGTTTTTAAGCAAGGGTTCGCTGAAGAAGCACGAAATCACCCATACTAAAGATTACAAGTATAAATGCGATGTTTGTAATAGAGGATTTCATGGCATTGCCGAAATGGAACACCATAAGAACGTGCAGCACAAAGGGGAGTATCTAATTTGCGAAGAATGTGGAAAGAAGTTCGTTAATAAACGTTACTATAAGATACACGTTTCTAGACATAAAGGTGATTGGGTTGAAATAAAGTTCCCGTGTGAATTATGCGATAAGGTCTTCATCAGTAAGGAAGGCCTTCGGGTCCATGCGAAATCCCACAAACCCGAGCATCACGTTTGTGAAGTCTGCGGTAAGGTCTTAACCAGTAAGGATACCCTTCGGATCCATATGAGATCGCATAAACGCAAACAGCACGTTTGTGACGTGTGCGGTAAGACTGTTACCAGCGCAGATTCTTTGAAGTTGCATAAACGGACTCATACCGGGGAGAAACCTCATGTTTGTGAAATTTGCGAAAAGTGCTTTCTTAGTAGGAAGTCCTTGAAGGCCAAAGTTGGGGAGGTGCAGCATATTTTCGAAGATAAATACGAATGCTCTGAATGTTTAGAAGTTTTTGTTTCACGTGATCAACTATTTATTCACCAGTTTGGAGACGATAGGCATTTCCTCGATTTTAGTGATACCGTCGAAGAAGGGGATTCCTATACTTGTGGACCAGAGAGTTTTAACAAGGGCAAAGAAGAAGACGAGGAAGGCAGCAAAACGTGCGAGATAtgcaataaatcatttaaaactgaAGCATATTTGACCGCACACATAAAGGTGCTCCATGAAAAGCAAAGCGGGaatatatttacaagtaaaagtTCGCTGAAGAATCACGACGTGACCCATACTAAAGACTATAAGTACAAGTGCGATATTTGCAACAGAGGGTTTTACAGTTCTGCTGAAGTAGAGCATCATAAGAACGTGCAGCACAAAGGGAAGTATCTAATTTGCGAAGAATGCGGAAAGAAATACGTCGATAAACGTTCCTATAGGCTACACGTTTCTAGACATCAACTTGATCAAGCCGAAATGAAGTTCCTGTGTGAATTGTGCGGTAAAGTTTTGAGCAGTAAGCATAGTCTTTGGAGCCATAGGAATACCCACAAACCTAAGCAGCACGTTTGCGAAGTCTGTGGTATGGGTGTTGCCAGCGCGGAATGTTTGGTGTTGCATAGACGAACTCATACCGGGGAGAAACCCCATGCTTGTGAAGTTTGCGGAAAGTGTTTTGTTAGCAAGGGAGCGTTAAAAGTGCACACAGTCACGCATACTAAAGAAAAGCCCCATCGTTGCCATATCTGTTCGAAAACCTTCTCACAAAGGGGCGCTCTTACGATGCATATGCGTTGTCATACAGGCGAGAGACCTTATGAATGCGCTTTTTGCAGGAAAAGATTTGTGAGTAAGGGCGCACTCAATTATCATAGCAAAACTCACGAGTTTTAA
- Protein Sequence
- MVSIMEIMQLCRLCLVKEQVNVPIFDEQDDIRQICLKITACLPVKVSKEDKLPKKICDGCLYKLELLYQFYNSAASAEKQLLSWIEQAKMDSKNAGGDLATQPQATVKQEKLEPVESTNETPELSSDAQSYILQQQQLQYESDFAFKESQGSNADGTASNASANSDEPIAKRPRRRRQATKPIPPEAIESSDDNDAGDSMMEMTVTKTEEESESEGDENVDDPEPTKYVAVGDDAEQPGPSGLGKGSADAPFSNAEVGQLQPLFEDTYECTECLQLFVSRYQLFTHQFKNHKHLLDLGEFVEEKDSYTCEECGKVYRKLEYFNKHKKEHQEGDKTCEICNKSFKTKVYLATHIKVIHERKQSDFVCDLCGKTFLSKGSLKKHEITHTKDYKYKCDVCNRGFHGIAEMEHHKNVQHKGEYLICEECGKKFVNKRYYKIHVSRHKGDWVEIKFPCELCDKVFISKEGLRVHAKSHKPEHHVCEVCGKVLTSKDTLRIHMRSHKRKQHVCDVCGKTVTSADSLKLHKRTHTGEKPHVCEICEKCFLSRKSLKAKVGEVQHIFEDKYECSECLEVFVSRDQLFIHQFGDDRHFLDFSDTVEEGDSYTCGPESFNKGKEEDEEGSKTCEICNKSFKTEAYLTAHIKVLHEKQSGNIFTSKSSLKNHDVTHTKDYKYKCDICNRGFYSSAEVEHHKNVQHKGKYLICEECGKKYVDKRSYRLHVSRHQLDQAEMKFLCELCGKVLSSKHSLWSHRNTHKPKQHVCEVCGMGVASAECLVLHRRTHTGEKPHACEVCGKCFVSKGALKVHTVTHTKEKPHRCHICSKTFSQRGALTMHMRCHTGERPYECAFCRKRFVSKGALNYHSKTHEF*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -