Basic Information

Insect: Trypoxylus dichotomus
Gene Symbol: gcna
Assembly: GCA_014905495.1
Location: BNES01000034.1:434268-460046[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 30 0.00015 0.014 16.3 2.3 1 20 468 487 468 490 0.95

2 30 4e-05 0.0035 18.2 0.7 1 23 496 519 496 519 0.96

3 30 8.4e-06 0.00075 20.3 1.9 1 23 524 546 524 546 0.99

4 30 4e-06 0.00035 21.3 1.3 2 23 555 576 554 576 0.97

5 30 1.2e-06 0.0001 23.0 1.1 1 23 583 605 583 605 0.97

6 30 0.00057 0.051 14.5 0.8 5 23 619 637 616 637 0.94

7 30 3.9e-08 3.4e-06 27.6 0.1 1 23 643 665 643 665 0.98

8 30 0.11 9.6 7.4 0.0 1 23 671 695 671 695 0.92

9 30 0.016 1.4 10.0 2.4 5 23 787 805 786 805 0.96

10 30 0.018 1.6 9.8 7.8 2 23 824 846 823 846 0.94

11 30 6.2e-05 0.0055 17.5 3.7 1 23 912 934 912 934 0.97

12 30 0.00021 0.019 15.9 2.6 1 23 940 963 940 963 0.95

13 30 4.5e-05 0.004 18.0 0.2 1 23 968 990 968 990 0.98

14 30 2e-05 0.0018 19.1 1.0 2 23 999 1020 998 1020 0.97

15 30 3.3e-07 2.9e-05 24.7 0.8 1 23 1027 1049 1027 1049 0.97

16 30 8.3e-06 0.00074 20.3 3.8 3 23 1061 1081 1059 1081 0.95

17 30 1.9e-06 0.00017 22.3 0.2 1 23 1087 1109 1087 1109 0.98

18 30 0.023 2.1 9.4 0.1 1 23 1115 1139 1115 1139 0.92

19 30 0.0071 0.63 11.1 0.9 5 23 1263 1281 1261 1281 0.96

20 30 0.055 4.9 8.3 8.0 2 23 1300 1322 1299 1322 0.94

21 30 3.3e-05 0.0029 18.4 3.2 1 23 1389 1411 1389 1411 0.97

22 30 3.7e-05 0.0033 18.2 1.4 1 23 1417 1440 1417 1440 0.95

23 30 9.9e-05 0.0088 16.9 0.1 1 23 1445 1467 1445 1467 0.97

24 30 1.8e-05 0.0016 19.2 1.4 2 23 1476 1497 1475 1497 0.97

25 30 1.3e-06 0.00012 22.8 0.3 1 23 1504 1526 1504 1526 0.96

26 30 1.8e-05 0.0016 19.2 1.4 3 23 1538 1558 1536 1558 0.92

27 30 0.00047 0.042 14.8 2.3 1 23 1564 1586 1564 1586 0.98

28 30 4.7e-06 0.00042 21.1 1.1 1 23 1592 1614 1592 1614 0.98

29 30 3.1e-07 2.8e-05 24.8 0.1 1 23 1620 1642 1620 1642 0.98

30 30 0.01 0.93 10.5 0.1 1 23 1648 1672 1648 1672 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	30	0.00015	0.014	16.3	2.3	1	20	468	487	468	490	0.95
2	30	4e-05	0.0035	18.2	0.7	1	23	496	519	496	519	0.96
3	30	8.4e-06	0.00075	20.3	1.9	1	23	524	546	524	546	0.99
4	30	4e-06	0.00035	21.3	1.3	2	23	555	576	554	576	0.97
5	30	1.2e-06	0.0001	23.0	1.1	1	23	583	605	583	605	0.97
6	30	0.00057	0.051	14.5	0.8	5	23	619	637	616	637	0.94
7	30	3.9e-08	3.4e-06	27.6	0.1	1	23	643	665	643	665	0.98
8	30	0.11	9.6	7.4	0.0	1	23	671	695	671	695	0.92
9	30	0.016	1.4	10.0	2.4	5	23	787	805	786	805	0.96
10	30	0.018	1.6	9.8	7.8	2	23	824	846	823	846	0.94
11	30	6.2e-05	0.0055	17.5	3.7	1	23	912	934	912	934	0.97
12	30	0.00021	0.019	15.9	2.6	1	23	940	963	940	963	0.95
13	30	4.5e-05	0.004	18.0	0.2	1	23	968	990	968	990	0.98
14	30	2e-05	0.0018	19.1	1.0	2	23	999	1020	998	1020	0.97
15	30	3.3e-07	2.9e-05	24.7	0.8	1	23	1027	1049	1027	1049	0.97
16	30	8.3e-06	0.00074	20.3	3.8	3	23	1061	1081	1059	1081	0.95
17	30	1.9e-06	0.00017	22.3	0.2	1	23	1087	1109	1087	1109	0.98
18	30	0.023	2.1	9.4	0.1	1	23	1115	1139	1115	1139	0.92
19	30	0.0071	0.63	11.1	0.9	5	23	1263	1281	1261	1281	0.96
20	30	0.055	4.9	8.3	8.0	2	23	1300	1322	1299	1322	0.94
21	30	3.3e-05	0.0029	18.4	3.2	1	23	1389	1411	1389	1411	0.97
22	30	3.7e-05	0.0033	18.2	1.4	1	23	1417	1440	1417	1440	0.95
23	30	9.9e-05	0.0088	16.9	0.1	1	23	1445	1467	1445	1467	0.97
24	30	1.8e-05	0.0016	19.2	1.4	2	23	1476	1497	1475	1497	0.97
25	30	1.3e-06	0.00012	22.8	0.3	1	23	1504	1526	1504	1526	0.96
26	30	1.8e-05	0.0016	19.2	1.4	3	23	1538	1558	1536	1558	0.92
27	30	0.00047	0.042	14.8	2.3	1	23	1564	1586	1564	1586	0.98
28	30	4.7e-06	0.00042	21.1	1.1	1	23	1592	1614	1592	1614	0.98
29	30	3.1e-07	2.8e-05	24.8	0.1	1	23	1620	1642	1620	1642	0.98
30	30	0.01	0.93	10.5	0.1	1	23	1648	1672	1648	1672	0.92

Sequence Information

Coding Sequence: ATGAAAGCGACAGAGTCATCTCCATGGTTAACAAAATTCAAGGATATCTGTGACATAGAGTCCAGTCCGGAATCTTTAAGTATCGGATCACCTTTAAAGtgcaaaatgaaattaaattttgatgtttCTAATTCCGATAGTGACGTCGCAATTAAAAATACGGAAgataattttgacaaatttatcaataagaCTCCGAGACGTGTTAAAAGAACGGATTATAATAAGGAAATTAGAAAGAGTAACTCGAATCTTGAAAAACCAACAGGAAAGGATTCTTTACAAGATATAGTAATATCATGTAAtttgaatatggaagatgagaggaATGTAGATGATAAGGTGCAAAATGACTTTTATGATACGATGTTGAAAGAGGAGGGAACCTTAGAAGATCGCTTGATTAAAAGAATTAACGGTGTTACTAATTCAAGTTTTGATAATATAATGAAATCTTTAGAAGACAAGCTTAGAAATGGCgtagttttgaaaaatgaaaattgtgaGATTCTGAATGAagattgtaataattataacaagAGCGATATATATCCTGCAATTCCTGATGAGAAACTAGAAAATATCAAGGCCAGAAAAACTAAACGTGTgccaaaatcaaataaaaataaagtacaaaAGGAAGAAAGAGAACGCAAGACTAATTCATTTGAAGAAGATTCGCCATCACTTGAAAGATGTATACCTATTGATAAATGCGATGCATCTGCTAGAATATTTCGAAGTACGTTCAAAACTTCCAAAGAAGAATTagcaagaaaattatttaatttatataatgataAGGTATTCAACAATAGCATACCAAACGATACTCTTTTGGAATGGAGTGACAGGATGCGTGGTACAGCTGGTTTCTGCTACTGCAAAAAAATTACTAGAAGGACAGGTACTGTTGAAAGAAAAGCTAGAATTGTATTAGCTACTAAAATATTAGATTCTGCTGACCGACTTAGAGATACTCTGATCCACGAAATGTGCCATGCCGCCACATGGATAGTCAACGAAATTAGTGATGGACATGGATCATTTTGGAAAGCTTGGGCGGCGAAAGCTATGAGGACATTTCCAGAATTGCCTCCAATTAAGAGATGTCACGATTATACAATTAACACAAAGTATACATATAAATGCTCCAGTTGTGGGTACAGTATTGGAAGGCATTCAAAATCGCTAGACATCGAAAGGAAACGTTGTGGATACTGTTacggaaaatttgaaattttcattaataaaaccaCAAAAGGTGGCATAAAAGCTATGGCACCTGCAACGCCAAAGAAGGAACCCACAGATGCTGATGTAACTGATAATGATCCAAATCCAACCATCGTTGGCAGGCCCAACAATGAATTCCTGAAGATAACAAAGATCACCAGGTGCTATACATGTCATGTATGTAATGCCCAGTTTGTTCGATCCAATCATTTAACACGTCACATGCCTCTGCATAAAGCAGTTTTGATACACAAATGCGATCGTTGTGATAAAGCTTTCGCAACACCTGAATATTTGGCGAAGCACGCACAAAAGGATCACATCGATAAACCTTACACATGCTCGATATGTCATAAGACGTATTCTACAGGGGAACAACTGATCAGGCATTTGAAGGTGCATTTGAAACCGATCGAGCTCGATACCAAATGTTCGATGTGCGACGAGAAATTTACTAGATCTGATCAGCTAGCAAAACATTTAAGATTGCATGTGCAACCGGAGAAGCgtcatgtttgcaatgaatgtGGTAATGCTTTTAGTAGGTTAGATAATTTAAAAACGCACCAAAGGATACACACTGGGAATAAGAAGAATCCCAACTTACTCCTTTGCATTTATTGCGGAagggaatttaaaaattcaagcaATATGcttAGACACTCTCGTGTTCATACTGGGGAACGTCCGTACCCTTGCAACATATGCGGCAAAGCGTTCACCCAGTCGAACGACCTTGCCGTACACATGCGCAGACATACCGGCGCCAGACCGTACGCTTGCGGAATGTGCCCCGCTCGATTCATAGAGTTAGGTCCATTGAAGGCGCACAGGAGATCCACAGGACACTGGATGGAAACACAACCGGACCTGAAAGGCGGCTACCGCGTCAAACCGGTAGCTTTGCTATCCGATTCTGTACCTATCGAATCCGAAACGCATAGTGAAGAGAAGCTGGAAGAAATAGAGATGCAAGAAATAAAAGTATCCCTATCGAATCACAATTCCGCCGACGCTGTAATGAAACCAACCGTCATAGAAGatacaaaattatttccaaagtGTTCGTTGAACGAGGTAGTGACTTTTAACGCTGTTAAAGAAAACGTAAACGAATTAAACGTATGCAAAAAAAGGTTTCCTAAAAGTAATCGCCTTAGGCACCATATGCTGACACATGAGGGTAAGGTTGAAATAAAATCTTCCGACAATAATGAAAAGGATAAGTTCATGGAGTGTGAATTTTGTCATCGAAAGTTCAAATACAGGAAAAACTTCAATCAGCATATGCATAATAAACATGGTACATTAGATAAGACTGATGTACCACTACGCTCATTACTTGAAAAAGCAGAAGTTAAATGTAAAGAAGAGGTTGCTGTACCTCaggaaagaaatgaaagtaatGATGCTGATGTAATTAATAATGATGTAAAGCCGAATATCGATAGCATACCCAACAATGAAATCCCGATGATGGCGAAAAATCCCAAGTGCTATACATGTCATGTATGTAATGTCCAGTTTGACCGACCCAATCATTTAACACGTCACATGACCTTGCATAAAGCAGTTTTGATACATAAATGCCATCGTTGTGACAAGGCTTTCGCAACGACTGACTATCTGGCGAAGCATGTTCAGGAAGATCACATCAACAAACCTTACACGTGTTTGATATGTGATAAGACGTACGCAAGAGGGGAACAGCTGATCAGGCATTTGAAGGCGCATTTGAATCCAACCGAACTCGATATCAAATGTTCGATGTGCGACAAACAGTTTACTAAGTCTGATCAGCTAgcaaatcatttaaaattacatcTGCAACAGGACAAACGTCACATTTGCAGTGAATGTGGTAAAGCTTTTAATAGGTTAGACAATCTAAAAGCGCACCAGAAGATACACACTGGGAAAAAGGATAATTCCAAACTACACCTTTGTGTTCATTGTGGAAaggaatttaataattcaagtaaTTTGcTTAGACATACTCGCGTTCATACTGGAGAGCGTCCGTACGCATGCAACTTGTGCGATAAGGCGTATACGCAGTCGAACGATCTCGCAGTACACATGCGTAGACATAGCGGCGACAGACCGTACTTTTGCGGGATTTGTCCGGATCGGTTCATAGGATCGGCGCAATTGAAAGCGCATAGGAGATCCACAGGACACTGGACGGAAACGCAACCGGACCTGAAACCCGGTCGTCGAGTCGCGCCAGTGGTTTCTCTACCTGAAGTCGTGGAAGAAGAAATAGAGGTTCAGGAAACGAAGGTAACCGTACCAAATCACAATTCCGCCGACACTGTAATGGAGCCGACCGTTATGGAAGATACAAAAGTATTTCCGCAGTTAAACGAGGTAGTGACCTCTAACGCTGTTAAAGAAGAGCGTGCGTTAGGCATGTGCTGGTCATTACACCTGCCGAGTCTCACGCGATTCCGCAACCCAGAACTGTCGAAAAGAAGTGCACAATTCAGTATGTTAAGCAATAGTCGAGGAAATTTAGACGAACATTTGAACATAACATCAGAACCAGTGGTGTGCAAAAAAAGGTTTCCTAAAAGTAATCGCCTTAGGCACCATATGCTAACACATGAGGGCAAAGTCGAAATAAAGAAATCTGACAACAATGAAAAGGATAAGAGCATGGAATGTGAATTTTGTCATCGAAAGTTCAAATACAGGAAGAATTACAATCACCATATCCATAATGAACATGGTACATTAGATAAGAATAATGTACCACTAGGCacattatttggaaaaagagATGAAGTTGAATGTAAAGAAGAGATTGTTGAACCTCAAGAAACAACTGAAACAAATGATGGTGATGTAACTAATAACGATGTAAAGCCGATCATCGATACCATACCCAACAATGAACTCCTGATGCTGACGAAAATCACCAAGTGCTATACATGTCATGTATGTAATGCCCAGTTTGTCCGATCCAATCACTTAACACGCCACATGGCCTTGCATAAAGCAGTTTTGATACATCAATGCCATCGTTGTGACAAGGCTTTCGCAACACCTGAATATTTAGCTAAACACGTACAAGAGGATCACATCGACAAACCTTACCCATGCTTGATATGTGATAAAACGTATATAAGAGGGGAACAGCTGATTAGGCATTTGAAAGCGCATTTAAATCCGACTGAACTCGATATCAAATGTTCGATGTGCGATGAGCATTTTACTAGGTCTGATGAGCTAGCGAAGCATTTAAAACTGCATCTACAACAAGATAAacgttatatttgcaataaatgtgGTGAAGCTTTTAATAGGTTAGACAATCTAAAAAGGCACCAAGGAATACACactggaaaaaaagaaaattccaaATTACATCTTTGTATTTATTGCGGAAGGGAGTTTAAAACTTCAAGTAATTTGATAGTTCATATAAGAAGGCATACCGGTGAAAAACCGTACAAGTGCAGTCAGTGTGATAAGGGATTCCCTTCTTCGGATGATCTGAAGTGCCATGAAAGGTCGCACTCAGGAGAAAAGCCATACATGTGCGCATTGTGCGGAAAAACCTTtaatacaaacaataaattGCTTAGACATACTCGTGTTCATACTGGAGAGCGTCCATATGCTTGCAACATATGTGGTAAGGCATACACACAGTCGAACGACCTCGCCGTACACATGCGTAGACATAGTGGTGACAAACCGTACTCTTGCGGGATTTGTCCGGATCGGTTCATAGGATCGGCGCAATTGAAAGCGCATAGGAGATCCACAGGACACTGGATGGAAACGCAACCGGACCTGAAACCCGGTCGTCGAGTCGCGCCAGTGGTTTCCCTACCCGGTGTCGTGGAAGAAGAAATAGAGGTACAGGAAACGAAGGTAATCCCACCAAATCACAATTCCGCCGACGCTGTAATGGAGCCGACCGTTATGGAAGATACAAAAGTATTTCCGCAGTATTCGTTAAACGAGGTAGTGACTTCTAACGCTGTTAAAGAAGAGGTAGACGAATTTAACGTCCAGATCAAAAGCGAAATACCATAG
Protein Sequence: MKATESSPWLTKFKDICDIESSPESLSIGSPLKCKMKLNFDVSNSDSDVAIKNTEDNFDKFINKTPRRVKRTDYNKEIRKSNSNLEKPTGKDSLQDIVISCNLNMEDERNVDDKVQNDFYDTMLKEEGTLEDRLIKRINGVTNSSFDNIMKSLEDKLRNGVVLKNENCEILNEDCNNYNKSDIYPAIPDEKLENIKARKTKRVPKSNKNKVQKEERERKTNSFEEDSPSLERCIPIDKCDASARIFRSTFKTSKEELARKLFNLYNDKVFNNSIPNDTLLEWSDRMRGTAGFCYCKKITRRTGTVERKARIVLATKILDSADRLRDTLIHEMCHAATWIVNEISDGHGSFWKAWAAKAMRTFPELPPIKRCHDYTINTKYTYKCSSCGYSIGRHSKSLDIERKRCGYCYGKFEIFINKTTKGGIKAMAPATPKKEPTDADVTDNDPNPTIVGRPNNEFLKITKITRCYTCHVCNAQFVRSNHLTRHMPLHKAVLIHKCDRCDKAFATPEYLAKHAQKDHIDKPYTCSICHKTYSTGEQLIRHLKVHLKPIELDTKCSMCDEKFTRSDQLAKHLRLHVQPEKRHVCNECGNAFSRLDNLKTHQRIHTGNKKNPNLLLCIYCGREFKNSSNMLRHSRVHTGERPYPCNICGKAFTQSNDLAVHMRRHTGARPYACGMCPARFIELGPLKAHRRSTGHWMETQPDLKGGYRVKPVALLSDSVPIESETHSEEKLEEIEMQEIKVSLSNHNSADAVMKPTVIEDTKLFPKCSLNEVVTFNAVKENVNELNVCKKRFPKSNRLRHHMLTHEGKVEIKSSDNNEKDKFMECEFCHRKFKYRKNFNQHMHNKHGTLDKTDVPLRSLLEKAEVKCKEEVAVPQERNESNDADVINNDVKPNIDSIPNNEIPMMAKNPKCYTCHVCNVQFDRPNHLTRHMTLHKAVLIHKCHRCDKAFATTDYLAKHVQEDHINKPYTCLICDKTYARGEQLIRHLKAHLNPTELDIKCSMCDKQFTKSDQLANHLKLHLQQDKRHICSECGKAFNRLDNLKAHQKIHTGKKDNSKLHLCVHCGKEFNNSSNLLRHTRVHTGERPYACNLCDKAYTQSNDLAVHMRRHSGDRPYFCGICPDRFIGSAQLKAHRRSTGHWTETQPDLKPGRRVAPVVSLPEVVEEEIEVQETKVTVPNHNSADTVMEPTVMEDTKVFPQLNEVVTSNAVKEERALGMCWSLHLPSLTRFRNPELSKRSAQFSMLSNSRGNLDEHLNITSEPVVCKKRFPKSNRLRHHMLTHEGKVEIKKSDNNEKDKSMECEFCHRKFKYRKNYNHHIHNEHGTLDKNNVPLGTLFGKRDEVECKEEIVEPQETTETNDGDVTNNDVKPIIDTIPNNELLMLTKITKCYTCHVCNAQFVRSNHLTRHMALHKAVLIHQCHRCDKAFATPEYLAKHVQEDHIDKPYPCLICDKTYIRGEQLIRHLKAHLNPTELDIKCSMCDEHFTRSDELAKHLKLHLQQDKRYICNKCGEAFNRLDNLKRHQGIHTGKKENSKLHLCIYCGREFKTSSNLIVHIRRHTGEKPYKCSQCDKGFPSSDDLKCHERSHSGEKPYMCALCGKTFNTNNKLLRHTRVHTGERPYACNICGKAYTQSNDLAVHMRRHSGDKPYSCGICPDRFIGSAQLKAHRRSTGHWMETQPDLKPGRRVAPVVSLPGVVEEEIEVQETKVIPPNHNSADAVMEPTVMEDTKVFPQYSLNEVVTSNAVKEEVDEFNVQIKSEIP*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -