Tdic005659.1
Basic Information
- Insect
- Trypoxylus dichotomus
- Gene Symbol
- bab2_1
- Assembly
- GCA_014905495.1
- Location
- BNES01000016.1:2658259-2669560[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.5e-17 3.1e-14 52.9 0.0 2 45 360 404 359 404 0.97
Sequence Information
- Coding Sequence
- ATGACAATGCAACAGTACTGTTTGAAATGGAACAACCATCAACCTAACTTCATTTCTGTGTTTTCTAGTCTTTTAAATAGCGAATCGTTGGTGGACGTTACGTTATCAGCGGAAGGCAGGCATCTTCAGGCACATAAACTTGTGCTATCTGCTTGTAGTTCATATTTTCAAtCATTATTTACAATCAATCCTTGTCAGCATCCAATTGTTATTTTGAAGGATGTCAAATTCACAGATTTAAAAGTTATGGTAGACTTTATGTATTATGGAGAAGTTAACGTCTCACAGGAACAGCTTCCCCATATATTAAAGACAGCTGAAATGTTGAAGATAAAAGGTTTGGCTGAAGTTCCTGTGGAGCCATCTATTTCGAGGCACAATAATTCGTTAGACAGAACAGAGTTGTTAACAGCAAATGAATCTAATTGGGGTTCCGAAGGTGGTCAAAGACAATCAATGACTCCATCTCCATGTCCATTATCGCCTAGTAGTCGCAGaAAACGATTACGAAAATCTTCAACAGGTTCTGGTTCTGGCTCAACAGAAAGAACTTCTGAAGAATTAGTTACTAATGATATTACAATAACATCCCCAAATGGTCCTCCAGGATCGGTAATTAAACCTGATCCAGGTGGTTTTCCAAATGAACCAAGCTCAGTGCCGAGATCTAAACAGCCTAGTACGGACTCGGAAGCACACAGAAGTAGTTCACATGACAGCGGTGAGAGTGAGCCAACGCATCAAATTACTCTTcAAATACCGcaacaacaagaaataaatatatcacaCAGTATTGAATCTGGTACGTCCATGAATATGCCAGGCCCTTCATCGTCCGCATCACAAACAGTATCAGGCTTCCAATGGGGTATCGTCGATCATGGTTATCCCGGGCATTTTGCTTCCTGTCAGCCTAACATTCCTTTTCATAACGATCTTCCATATACTCCGAACAGTCATATATCCAGCCCAAATCATCACCATCCGCCTGATCAGAAACCCAATCCCTCCCATCAAATAACAAATTCTCCGCCCCAAATAATGCAGAAACGCAAGCGAAATTTAAATCCACAAGCAGACGAAAATTTCGTACGTGCTCTGGAGGCTGTCCGATTCGGAGGTATTGGTTTCTGTAAGGCGGCAAGAATGTACGGGGTGAATAATCGTACGCTTTGGTTGGAATACAAAAAACGTGGATATCCAGTAAGTAGGTTgtctattaaaaatagaaaaccggAAAACGGCAACCAAGCACCGCAAGGACAACAACCGCCTCAACAGCAGCCCCAGCAAGGACAACAACAACCCCAACAGCAACAACAGCCTCAACAGCAACAACAACAGCAACAGCAGCCCCAAGCGCCACAACCTCAACCGCCACCTCCTCAACAGCAACCTCAACAACCACAACATCAACCTCCACAACCACAAATTCAGTCGACCGTCGCTTCAAATGTTCATCCTGAAAACGTTGTTGTGAACACTTCCAATAATCCAATTGCCATGATAAGTAGTGCTTTTTTAGAAGGTAGACCAGTTGAATTAGCACCAGTTTTCCAAAGATCCAGATTCTTTGATAACGGTATTATCAATAGTCAACCAATGAATCTGCAAGGAATAAACTTTGAGCCTATGTGA
- Protein Sequence
- MTMQQYCLKWNNHQPNFISVFSSLLNSESLVDVTLSAEGRHLQAHKLVLSACSSYFQSLFTINPCQHPIVILKDVKFTDLKVMVDFMYYGEVNVSQEQLPHILKTAEMLKIKGLAEVPVEPSISRHNNSLDRTELLTANESNWGSEGGQRQSMTPSPCPLSPSSRRKRLRKSSTGSGSGSTERTSEELVTNDITITSPNGPPGSVIKPDPGGFPNEPSSVPRSKQPSTDSEAHRSSSHDSGESEPTHQITLQIPQQQEINISHSIESGTSMNMPGPSSSASQTVSGFQWGIVDHGYPGHFASCQPNIPFHNDLPYTPNSHISSPNHHHPPDQKPNPSHQITNSPPQIMQKRKRNLNPQADENFVRALEAVRFGGIGFCKAARMYGVNNRTLWLEYKKRGYPVSRLSIKNRKPENGNQAPQGQQPPQQQPQQGQQQPQQQQQPQQQQQQQQQPQAPQPQPPPPQQQPQQPQHQPPQPQIQSTVASNVHPENVVVNTSNNPIAMISSAFLEGRPVELAPVFQRSRFFDNGIINSQPMNLQGINFEPM*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01252975;
- 90% Identity
- iTF_01498992; iTF_01252975; iTF_01252620; iTF_00434260; iTF_00433964; iTF_00308125; iTF_00307495; iTF_00627358; iTF_00626979;
- 80% Identity
- iTF_01498992;