Basic Information

Insect: Trypoxylon attenuatum
Gene Symbol: Glis3
Assembly: GCA_963989405.1
Location: OZ022490.1:3231862-3235058[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 0.00025 0.024 15.2 0.3 1 23 357 382 357 382 0.97

2 5 0.24 22 5.9 0.1 1 23 449 475 449 475 0.85

3 5 1.4e-06 0.00013 22.3 0.6 2 23 482 505 481 505 0.97

4 5 9.9e-05 0.0093 16.5 2.4 1 23 511 535 511 535 0.96

5 5 3.3e-06 0.00031 21.2 0.2 1 23 541 565 541 565 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	0.00025	0.024	15.2	0.3	1	23	357	382	357	382	0.97
2	5	0.24	22	5.9	0.1	1	23	449	475	449	475	0.85
3	5	1.4e-06	0.00013	22.3	0.6	2	23	482	505	481	505	0.97
4	5	9.9e-05	0.0093	16.5	2.4	1	23	511	535	511	535	0.96
5	5	3.3e-06	0.00031	21.2	0.2	1	23	541	565	541	565	0.96

Sequence Information

Coding Sequence: ATGCATCTGGAGGAGTATCATCCGGAGAGGAGCGAGGAAGAAGCATACAAGCCACTTGGCTTGCGTCGTTCGGCTGGTCTCGAGCACGAGGACTTCTCCAGTGGCCCCATGCATTTGACGCCCAGCGTGAACGTCACAATTATGAGTGGAAATGCTCTTCAGCAAGATTGCTGGATTACCCAACAAACAAGCTTGACTGGCCTGACAGATCAAATCAAGCAGCCATTGACGGTCGATGCCAACCTTTCGTCCCCGCTGCTACTGAATTCTGATTGGGAGCAACCCGTCACGGTGTTCCAGTACCCTTGTCAACCGTATACCGGTAGCGGTATTCTCGATGGATCTCCAGGAAGTACCGGTAGCGAGGCTACCACTCCAACCTGGAGCAACGTCATAACTGGCTTGGACTGTTCGGGGGACGAATTGTGCGATGGTTCTTTCCCTGATCAGAGACTTCCTCCCGTGGGATCAGCATTCTCGTTTTCCCGCACTTTCTGCAATGTGGCAGCGACAGCGGCCACTACGCCAACGGCGTTATCGTACCCGGAGCAGCGGGCCGATTACCAGATTAATTACTGCAATTACCAAGACTACCGGGAAGTGTTTCGCGAGGAGAGCCCTGTGCTATTGCCAGCAACGACACCAGCAACTGAGAATGATGGTGTTCAGGAACTGGACAACACTGGCACCTGCATGCAAATCGTTGACGAGTTCGATTTAAGTCTGATACGCGGTGACCCTACGTCTCTGCTGAACGACATCGAACCCCCAACGTCACCCTCGCCTACGTACGTTCAAGAGATCCAAGATccttttctcaatttttctgGCTCTTGCTACGCTGTTGGACATCTCGTCTCCTCGCAACAATCCACGATATCCGGTGTTAATTTTGGGGCGACCGATAGCACCGCACTGTTGGATGGTCTTGCGAACCAAATTGTGCTGCCCCGCAGCGAGGGCCTTCTTCTGGCTGATCGACGAGTCCTGCCGACGAGTGCGAAATCTGCCTCGAATAATCGGGAGAAATCGTTCGCTGGTGCGGAAGACAGTCTACTGACGACGACTTACCAGTGTCGGTGGATCGACTGCGGGTGCGCATTCGCCGAACAAGAGAGTCTGGTTCGGCATATCGAAAGGCGGCACGTCGAATCCTCATCCCCAAGCGGCCACGGACATGGACGCCGCGTTCAGCGTGATCGCGATAAAGAGAAGGACAAAGAccgggagaaggaaaaagcgCGGGAGAACGAAAGGGacggtgaaaaaaagaagcaaggAGAAAAAGACAAGGAGATTGACGGAGGGTCCTACGTGGGGTCTACGACACCTAGTCAAGATGAGTTCACTTGCCTGTGGCAAGGATGTCCTCGTGCAAGACCTTTCAATGCCAGATACAAATTGTTGATTCACATGAGAGTCCATAGTGGAGAAAAACCTAATAAATGCCCGTTCGCTGGTTGCAAAAAAGCGTTCTCGCGGTTGGAGAACCTCAAGATCCATCAGCGGTCCCACACCGGGGAAAGGCCTTACGCGTGCCAGCATCGGGGCTGCACGAAAGCTTTCAGCAACAGTAGCGATCGCGCGAAACACCAGAGGACACATTACGACACGAAACCGTACGCGTGTCAGGTAGCGGGGTGTGGGAAGCGGTACACGGATCCATCTAGCCTAAGGAAACACGTGAAGAATCATTCGGAACCGGCGAATTTGTTATCGACGACCGCATTGCCCGCAGTCATCGATAATCGAATACCCATGAAACCTGCGAGCATTCCTTGTAGTTTGGCAAATGTCGCCACGCGACAAGTCCCAACGTCGGCAGGATCCAGGCAACATAATCAACCACCGAGTGTCTCTGTTGCGGAAGAGCCGCAGCATTATGACACGTTTAAGAATTCCATTGGGCATTGCAAGAGCGAACCTGTGAACCTTTTCCAGTCGGATCTCTGTCAGATCGACAGGATTTCCATGAACCTTGAAACCAATCAGGAATTCGTCCCAGTTGAATCCGTGCGGCGCATCCTGATCGATGACATCACGAACTGCCAAACGACGGATACCGGCTACGACATCGAAGACGATGTGCCCGATTTCCAGGAACTTGGTTCCGACATCGAGCAGCAGTTTCTTGAACTAAGCAATTTGAACGATGCCATTTTCATCGACGGATGA
Protein Sequence: MHLEEYHPERSEEEAYKPLGLRRSAGLEHEDFSSGPMHLTPSVNVTIMSGNALQQDCWITQQTSLTGLTDQIKQPLTVDANLSSPLLLNSDWEQPVTVFQYPCQPYTGSGILDGSPGSTGSEATTPTWSNVITGLDCSGDELCDGSFPDQRLPPVGSAFSFSRTFCNVAATAATTPTALSYPEQRADYQINYCNYQDYREVFREESPVLLPATTPATENDGVQELDNTGTCMQIVDEFDLSLIRGDPTSLLNDIEPPTSPSPTYVQEIQDPFLNFSGSCYAVGHLVSSQQSTISGVNFGATDSTALLDGLANQIVLPRSEGLLLADRRVLPTSAKSASNNREKSFAGAEDSLLTTTYQCRWIDCGCAFAEQESLVRHIERRHVESSSPSGHGHGRRVQRDRDKEKDKDREKEKARENERDGEKKKQGEKDKEIDGGSYVGSTTPSQDEFTCLWQGCPRARPFNARYKLLIHMRVHSGEKPNKCPFAGCKKAFSRLENLKIHQRSHTGERPYACQHRGCTKAFSNSSDRAKHQRTHYDTKPYACQVAGCGKRYTDPSSLRKHVKNHSEPANLLSTTALPAVIDNRIPMKPASIPCSLANVATRQVPTSAGSRQHNQPPSVSVAEEPQHYDTFKNSIGHCKSEPVNLFQSDLCQIDRISMNLETNQEFVPVESVRRILIDDITNCQTTDTGYDIEDDVPDFQELGSDIEQQFLELSNLNDAIFIDG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -