Basic Information

Insect: Trypoxylon attenuatum
Gene Symbol: -
Assembly: GCA_963989405.1
Location: OZ022491.1:26417290-26423229[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 3.9e-06 0.00037 20.9 0.7 1 23 355 378 355 378 0.97

2 8 0.00015 0.014 15.9 2.8 1 23 394 416 394 416 0.96

3 8 0.00013 0.012 16.1 1.7 1 23 440 462 440 462 0.97

4 8 0.0068 0.63 10.7 3.2 1 23 470 492 470 492 0.98

5 8 0.00011 0.01 16.4 0.3 1 23 534 556 534 556 0.97

6 8 6.2e-06 0.00058 20.3 0.8 2 23 562 583 561 583 0.97

7 8 4.6e-07 4.3e-05 23.9 0.7 1 23 589 611 589 611 0.95

8 8 0.0002 0.019 15.5 1.0 1 23 617 639 617 639 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	3.9e-06	0.00037	20.9	0.7	1	23	355	378	355	378	0.97
2	8	0.00015	0.014	15.9	2.8	1	23	394	416	394	416	0.96
3	8	0.00013	0.012	16.1	1.7	1	23	440	462	440	462	0.97
4	8	0.0068	0.63	10.7	3.2	1	23	470	492	470	492	0.98
5	8	0.00011	0.01	16.4	0.3	1	23	534	556	534	556	0.97
6	8	6.2e-06	0.00058	20.3	0.8	2	23	562	583	561	583	0.97
7	8	4.6e-07	4.3e-05	23.9	0.7	1	23	589	611	589	611	0.95
8	8	0.0002	0.019	15.5	1.0	1	23	617	639	617	639	0.98

Sequence Information

Coding Sequence: ATGTCCTCCCTCGACTATCTGGACTTGTGTCGGCTGTGTCTCGTGAAGGACCGCGTCTCTGTGCCGATCTTCGAGGGTGAGGGCGACGTGCGGCAGATTTTCCTCAAGATCGCCGCTTGTCTGCCGGTCAAGGTTGCCAGAGAGGACAAGTTACCCAAGAAAATATGTGACGACTGTGTGTATaaagtagaattattttatcagTTTTGGAACACGACAGCAAACTCAGAAAAACAACTGCTACAATGGCTAGGGGAAGTAAACTTGGAGGACAAGCAGGGTTATGTTACCAATGTTATGAATCCgAACGTGTTGAAACCAGAACAAAGCAACACAGAGAACAGGTTAGATGGTACCGTAATGCAGCAAGTGGACGGACAAAACAATTTAGGGATAGGGATGATGGACAACATGAGTCTGGGAATCCCAATGATCATTTCCTCTGGCAATCAGCAGGAAATAACCTCAGTTCCTATGGATACCGGCGGTAACTCTGTACAAACCGTTCAGGCAGTGCCTGGTCCAAGCACCCAAACCACACACaaccaaatgacacaaaatcaAACGAGTACCACGCAGcaagaagaggacgaagagagcagcgaagaagatgaaaataCGGACGAAGAATGCGATGCGGAAGAAGGTTTACCTGTcaaagaagagaacgaagactCCAATGCCAACAGAACGATAGAACCCACCACTTTTGTTAATGTCTCTCTGGCGTGCGACGAGGCAGGTCCATCTGGGCTACAACAGCGGAAGATCGCAGAGATGCCAGAAATGGCAATGACACAAAGCACAGACGGGGATCCCAAATCTGgGGAAGGAGGCGAAACCTTTGGCGGATTGTCCGGAATGCTGCGTCAAATACTCTCACCCTCGCCCGAGACAGGAGACGTCGGCTTACCTATCAGTTACTCCTTTCTTCAGAACAACTCGATATTCTCGAATCAGCCACCTATGTTGACTCACACGTTACAGACAATTCCCAATCAATTGTCATCCCTGTGTCCTGAACAAAACCTCCTGGAACACGTTCAAATTTTCACGGAGTCTCACCCTTGCCCGACCTGTGGCCTCGAGTTTCGAAGTGCTGTCAAGTTAAATTACCACATGCGAACGAGTCACCCGGCTCGCACAGAGTTCGAGCATCATATGGAGAACCCAGTAAGATATTCCTGCAACATGTGCTCGCGAAGTTTCTTTTCCCTGAGTCACCTACGAATGCACGAAGCGAGCCATTCGATTTTAACTAGTCCCCCGTGTCCATCAACTTCGAGTACCCCTTCCCCGAGCAATGTCGAAAAAACTTTTGCCTGCGATCGATGTCAGGCTACATTTCGGTATCGCACACTCCTCGAACGGCATAGAAAGATGCACGAGGTCGGGCAAGAAAAGCCCTACTCTTGTCCTAGATGCTTAATGCGCTTCGAGACGCGAAACTTGTACAATCATCACGCGAAAACGCATAAGCCGATTGTGACAGCCAATGACAGGAGTAGTGTGCCAGAATCCATGGTATCTTCTGGGGATCCCATTACTGCTGGCATAGATTGTGCCTTAATTTCGCCTAATAACAAGTCGGCAGCCTTGTACCCTTGCGACTCTTGTTCAAAACAATTCACCAGCGCCGAATCTCTGACCAGTCACAAGGCTGTGCACAGATCAAGGCCACTCGTTTGTGATGTGTGTGGTAAGGGCTTCACACATCGCAAGTATTATGTCGTGCATCAGCGTATTCATACGGGTGAGAGGCCGTACCTCTGTGCCATGTGCGGCAAATCATTTACACAGGCGTCCACGCTCACGGTTCATCGCAGGTACCACACGGGAGAACGCCCTTATACTTGCACCCTCTGTGGAAAGGGGTTCGTTACCAGAACAATTATGCTGAACCACATGAAAAAACATTAa
Protein Sequence: MSSLDYLDLCRLCLVKDRVSVPIFEGEGDVRQIFLKIAACLPVKVAREDKLPKKICDDCVYKVELFYQFWNTTANSEKQLLQWLGEVNLEDKQGYVTNVMNPNVLKPEQSNTENRLDGTVMQQVDGQNNLGIGMMDNMSLGIPMIISSGNQQEITSVPMDTGGNSVQTVQAVPGPSTQTTHNQMTQNQTSTTQQEEDEESSEEDENTDEECDAEEGLPVKEENEDSNANRTIEPTTFVNVSLACDEAGPSGLQQRKIAEMPEMAMTQSTDGDPKSGEGGETFGGLSGMLRQILSPSPETGDVGLPISYSFLQNNSIFSNQPPMLTHTLQTIPNQLSSLCPEQNLLEHVQIFTESHPCPTCGLEFRSAVKLNYHMRTSHPARTEFEHHMENPVRYSCNMCSRSFFSLSHLRMHEASHSILTSPPCPSTSSTPSPSNVEKTFACDRCQATFRYRTLLERHRKMHEVGQEKPYSCPRCLMRFETRNLYNHHAKTHKPIVTANDRSSVPESMVSSGDPITAGIDCALISPNNKSAALYPCDSCSKQFTSAESLTSHKAVHRSRPLVCDVCGKGFTHRKYYVVHQRIHTGERPYLCAMCGKSFTQASTLTVHRRYHTGERPYTCTLCGKGFVTRTIMLNHMKKH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00633853;
90% Identity: -
80% Identity: -