Tatt001060.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Trypoxylon attenuatum
Gene Symbol
Prdm15
Assembly
GCA_963989405.1
Location
OZ022488.1:7795100-7798799[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 0.49 46 4.9 0.2 2 23 234 255 233 255 0.95
2 14 0.017 1.6 9.5 5.0 2 23 263 285 262 285 0.93
3 14 6.6e-05 0.0062 17.1 3.8 1 23 419 441 419 441 0.98
4 14 3.8e-05 0.0036 17.8 1.5 1 20 445 464 445 466 0.94
5 14 4.3e-07 4.1e-05 23.9 2.4 1 23 474 496 474 496 0.98
6 14 0.23 21 5.9 1.6 2 21 501 520 500 521 0.89
7 14 7.4e-06 0.00069 20.1 2.8 1 21 525 545 525 546 0.95
8 14 0.003 0.28 11.8 0.2 2 23 568 589 568 589 0.97
9 14 0.017 1.6 9.5 1.4 1 23 594 616 594 616 0.98
10 14 0.0012 0.11 13.1 0.2 2 23 622 643 621 643 0.96
11 14 0.00069 0.065 13.9 8.3 1 23 648 671 648 671 0.95
12 14 0.0012 0.12 13.0 0.7 1 23 677 699 677 699 0.99
13 14 0.11 10 6.9 5.6 2 23 706 728 705 728 0.95
14 14 0.0071 0.66 10.7 10.2 1 23 733 756 733 756 0.97

Sequence Information

Coding Sequence
ATGGCTATCGAAATCGACAAAGTTTCGCTGTCGCATAAGCCAGTGTGTGGCATATGTGGTCAGAGTCATGAAGCCAAGAAATGTTTGGCCGTGGAAAATATGCACTATATCTCAGATGCACCGATTATGTCAAGAGCAAGACAGACATTACCTAAGGATTTTAAAATTGTTGACATGGCGGATGGATCCACCAATGTGATTACCTTAGTAGAACTCCACAAGGGTACAACGCTTGGTCCTTTATGTGGGAGAAAAGCATCTGTCATGAATGCATCCACAGACTTTCCAATAAAAGTCTTTGGAGACAAATCTTCCGAAACGATGTATCTTGATTCGtccaatgaaaattattctaacTGGATGCGTTTCATTGCAACTGCTACAAGCGAACAGGAACAAAATTTGATTTGTTATCAGGTAATGCAAAATATATATTACACTGCTATGTGTACAATTCCTGTCGGCGAAACATTAAAAGTCTGGTATGCACCGTACTATGCATTGAAGATGAACATGCCACTGTATAACAAAAGCTTTGCAGTGTACAATACTGTCACGCTATTTAACAAACAActagaaatagaagaaatgaACCAGCCAGTTAAACATCAATCTTTGTCAAATGACAGTATGgtagaaaaattaatgaacaAAGGGACAGCTCAAGAATCGGATGCCCCAAACAATATCCAAGCTTGGAATTGTAAATTTTGCTCTGTGACAAGTACATCTGTTGCTACATATGCAAAACATCTAATGGGACATTATAAACCGTTACAAGGAATACACTGTGATATATGcgataaaaaatgtaataatacaTCGGTTTTAAAAAGACATAAAAAAGCAAAACACAGAGAAGTTGATGAAAAGAATGTTGAAAGTATATCTATGAATAATGAAGATGCTGTAGCACTCGAGGAATCGCTTTTCAGTAAGTTGAGAGACTGTGAACCTGTTACAGTGGTACACGAACAAAATTTACTGGACGAATTAAATTCTGGTATAATAACGAAAGATATAATCGAACAATGCATGTGTGAGAAAAATCACACATGTGGCCTTTCTaatttaaaatcgaatttagaaaataataaggATCCTTCGCAAACTGAAACCTATTTATCTTCTAATATACAATTCAAAGTGTTCAATGAACTAATTGCAACACAAAATACTGTTGCTTCCACAAATTCAGACATTGACGAATTAGCATCgcattttttacaattaacAGACAGGAAATTGACTAATTTCGAATGTGATATTTGTAAGAAGAAATTCGGTAAAGTAGATTATTTATGCCGTCATTTACGGAAACACACCGGAGAATTCACTTGTCCTCATTGtcatattGTATTTGCTAGAAAGGAAAACCTACTGTCTCATGCGTGCATATCGGCAAATCTAGAATACTCTTACGAGTGTTCATTGTGCCAGAAAGCTTTCACACAGAAAAAGTACTTAAAACGGCATATGGCCAAACATAATGAGCAAGTACAATGCAAGTGGTGCCATACAACGTTCGCATCACTAATCGAACAAACAGTCCATAAATGTACTGCACCACAATACGTGTGTGATAAATGTAAAAAGAGATTCGTTCATAAAATGCATTTAAATCGCCATATGATATCACAGTGCAATTCAAAACCAACcagaaagaaaattaagaaaaagaaagacgCTAATCAATCTGCAGTATGCGAGAAGTGTGGAGATATATTTGGAAATCCACAAAGTCTTAAACAACATTTGTTTACGCATGGAGAGCGAATGTTTGAGTGTAATATTTGCCACAGTCGTTTCTATAGAATGGCAATATTAAAAGAACACATGAGTGTACatgaaaatgcaaatatttcctGTAACGTTTGcgggaaaaaagtaaaatcgaaaaaagtTTTGGATGTACATATGCTTCTCCatggaaataagaaatacgaTTGTAACAAATGTGGCAAAAGCTTTTACCAAAAATGTAACTACCTCAAACATTATAAACATATGCACGAAAATGTAGCGGGCTACAAATGTTCCCGCTGTACAGCCGTACTTACTGACAAACAAAGTTTAGATGAACATATGAAAAGTCATATAGTGTCAGCACAATGTGTGTGCTCATTCTGCATGAAAACATTCCAAAagGAACATCAATTAAAACGGCATGTTCAAGTTAATCATAGTAATGTAATATATCGTTGCCCATTTTGCCATAAGACTACTCGACATAAACAGAGTTTCAAAAGGCATTTTAAGCGGCAACATAATACTTTACGATTACGTTGGGATAAACCTGGCTTCGTTGATCAGCATGCcgaatatttacaattagcaCAAGAAGAAGCAACGAAAGAATCGGATAATTTTCTTGTAGATAATTACGTGCATGTCGCAAAAAACAATGCTGGTACTACAGAGAGTAAACAAGGAGAAACGATAGATTTCTGTACAGTATTaaatgaagagaaaaggagactTGAGAATTGGAAAGAATCGGCAGAACCGTATGTGGAACTGGGAAATATACCTGAGACTGATCAAATTATTGCATTTGTGGAATCATCTAGTCAGAAAGAAATACAACAGATAAAACTCAACGATGTATTAAACGATGTTCCACAAATCAGCATGCCTGAAACACTTCCAACAACTGAGTCTGTGTTGAAAAGTACCTACgtcgatgatgatgatggtggcGACGATATAATGTTTTATGTCCTTCAGTGA
Protein Sequence
MAIEIDKVSLSHKPVCGICGQSHEAKKCLAVENMHYISDAPIMSRARQTLPKDFKIVDMADGSTNVITLVELHKGTTLGPLCGRKASVMNASTDFPIKVFGDKSSETMYLDSSNENYSNWMRFIATATSEQEQNLICYQVMQNIYYTAMCTIPVGETLKVWYAPYYALKMNMPLYNKSFAVYNTVTLFNKQLEIEEMNQPVKHQSLSNDSMVEKLMNKGTAQESDAPNNIQAWNCKFCSVTSTSVATYAKHLMGHYKPLQGIHCDICDKKCNNTSVLKRHKKAKHREVDEKNVESISMNNEDAVALEESLFSKLRDCEPVTVVHEQNLLDELNSGIITKDIIEQCMCEKNHTCGLSNLKSNLENNKDPSQTETYLSSNIQFKVFNELIATQNTVASTNSDIDELASHFLQLTDRKLTNFECDICKKKFGKVDYLCRHLRKHTGEFTCPHCHIVFARKENLLSHACISANLEYSYECSLCQKAFTQKKYLKRHMAKHNEQVQCKWCHTTFASLIEQTVHKCTAPQYVCDKCKKRFVHKMHLNRHMISQCNSKPTRKKIKKKKDANQSAVCEKCGDIFGNPQSLKQHLFTHGERMFECNICHSRFYRMAILKEHMSVHENANISCNVCGKKVKSKKVLDVHMLLHGNKKYDCNKCGKSFYQKCNYLKHYKHMHENVAGYKCSRCTAVLTDKQSLDEHMKSHIVSAQCVCSFCMKTFQKEHQLKRHVQVNHSNVIYRCPFCHKTTRHKQSFKRHFKRQHNTLRLRWDKPGFVDQHAEYLQLAQEEATKESDNFLVDNYVHVAKNNAGTTESKQGETIDFCTVLNEEKRRLENWKESAEPYVELGNIPETDQIIAFVESSSQKEIQQIKLNDVLNDVPQISMPETLPTTESVLKSTYVDDDDGGDDIMFYVLQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-