Basic Information

Insect: Trypoxylon attenuatum
Gene Symbol: RREB1
Assembly: GCA_963989405.1
Location: OZ022488.1:9453928-9459490[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0039 0.36 11.5 0.1 1 23 51 73 51 73 0.97

2 16 0.00054 0.051 14.2 0.3 1 23 88 110 88 110 0.96

3 16 9.8e-07 9.2e-05 22.8 2.5 1 23 116 139 116 139 0.98

4 16 0.01 0.95 10.2 0.0 1 23 240 264 240 264 0.95

5 16 0.082 7.7 7.3 2.9 2 23 270 292 270 292 0.95

6 16 0.29 27 5.6 0.6 1 19 348 366 348 368 0.95

7 16 0.17 16 6.4 0.1 1 23 482 504 482 504 0.96

8 16 2.5e-05 0.0023 18.4 0.3 1 23 513 535 513 535 0.98

9 16 0.0011 0.1 13.2 2.8 1 23 541 564 541 564 0.97

10 16 0.0004 0.038 14.6 3.0 1 23 954 977 954 977 0.97

11 16 0.00058 0.054 14.1 0.1 3 23 1264 1284 1262 1284 0.97

12 16 0.51 48 4.8 6.0 1 23 1290 1313 1290 1313 0.97

13 16 0.0036 0.34 11.6 2.2 1 23 1351 1375 1351 1375 0.97

14 16 1.8 1.7e+02 3.1 2.4 1 23 1458 1481 1458 1481 0.93

15 16 0.0098 0.92 10.2 0.4 2 23 1531 1552 1530 1552 0.94

16 16 1.2 1.1e+02 3.7 8.2 1 23 1558 1580 1558 1580 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0039	0.36	11.5	0.1	1	23	51	73	51	73	0.97
2	16	0.00054	0.051	14.2	0.3	1	23	88	110	88	110	0.96
3	16	9.8e-07	9.2e-05	22.8	2.5	1	23	116	139	116	139	0.98
4	16	0.01	0.95	10.2	0.0	1	23	240	264	240	264	0.95
5	16	0.082	7.7	7.3	2.9	2	23	270	292	270	292	0.95
6	16	0.29	27	5.6	0.6	1	19	348	366	348	368	0.95
7	16	0.17	16	6.4	0.1	1	23	482	504	482	504	0.96
8	16	2.5e-05	0.0023	18.4	0.3	1	23	513	535	513	535	0.98
9	16	0.0011	0.1	13.2	2.8	1	23	541	564	541	564	0.97
10	16	0.0004	0.038	14.6	3.0	1	23	954	977	954	977	0.97
11	16	0.00058	0.054	14.1	0.1	3	23	1264	1284	1262	1284	0.97
12	16	0.51	48	4.8	6.0	1	23	1290	1313	1290	1313	0.97
13	16	0.0036	0.34	11.6	2.2	1	23	1351	1375	1351	1375	0.97
14	16	1.8	1.7e+02	3.1	2.4	1	23	1458	1481	1458	1481	0.93
15	16	0.0098	0.92	10.2	0.4	2	23	1531	1552	1530	1552	0.94
16	16	1.2	1.1e+02	3.7	8.2	1	23	1558	1580	1558	1580	0.98

Sequence Information

Coding Sequence: ATGAAACCTGATGGTCTGAGAATTGCGCGTCTAATTTTGTGTATTCTTGTTTCAGTGACGCCCAAAAGCGAGCCGGACCAGGAACACGATAACCAAATGCAAGCAGATGCCGCGTCACCACCATCGAGTGTGGAGCTGTCCGAAGGCGCACATCCCTGTCCGGCGTGTCCAACGGTGCTGCCAAGTTCCCGAGACTTGACGAGTCACTTGCGCAACCACAACTCTCCCCGCAGTGGCACGGATTGCAGTGCCGAAGAAGACTACTGCTGTGGCGTCTGCAACAAGGTGCTGAGCTCCGCAAGCTCGTTGGATCGACACGCTCTGGTCCACTCTGGCGAACGACCGTTCAAGTGCAAACACTGTGACATGGCCTTCACAACGAACGGAAACATGAATAGGCACCTAAGAAGCGCGCACCGCGATGTGTCACCTTCCCAACAGAGTTGCACGGACTCTGAGGGCAGCAGCGACTCGGAGAAGCCCTCAAAGCGGCGCCACATCGAGGAGGAATACAACAACAATGAGATTGCGAAACGCAATTCGCCGGATGATCTGATCCAACAAAGTCCAAGGTCCACGAACAGTTTGATCGGCCAAGGCAAAAGAAAGTGTCCAGATGGATTTTTCAGCGATGGTGAAGGTCAGAGAAAGCACAAGATACTCTTGAACAATTCAAGAACCGAAGGGAAGCCACGCACGGATGACAATCAGAATGTTTACAACTGCCCCGTTTGCGGCAGGCAAGATTTTGCGACTAGTGCGCTCTTGGAAGCTCACCTTGAACGCAGCCATCCGGAATTCCCGGCCAAGTGTGACACGTGCAACCTCTCCTTCAAGAGTCATCGAGTTTTAAATCTCCATCGCTTTATGATACACTTTGCCGAGCATTCGATCGGTGGCACTGCAAGAAATTTACGAAATTCTGTCGTGGGATTCAATGATCTGACTTTCGTCGATTTTTCATCCGATAAATTCCCCGCGATCGCGCGTGCAGTTTGCGAGCAATCGCTTCATCGACCTGCCTCGGGTGAGGTCACTAAGTTTCAATGTACCAAGTGCCTTAGAGCATTTCCTTGTAGGTCTGCGCTCGAGGCTCACGAAACCGATTGCggtataattaattctcaaAGTAGAAATACGGACGACAACCAATCGAAACGAGACGATTTCTTCGCTGGATTGGACTTGCAGAATAAAGCGGCACTCGTCGAAGCCAAAGAGGGAAAAGATCTTGCGGATATTCAGAGCATCATATCCGTTACGTCTGGCCCGATTTTACAGAATTTCCCCCGTTCGGATGCGAGTACACCTGAGAATAGTATCAGACTTAATCCTAGTGTAGGATCTTCCGGATCATCCGGAACTTTTTCATCGGAGTTTCACGAAGAAGAGGCACAGGATGCTTTCGCGGCTGAATTTCGGAAAATGAAGTTGAAGGGTGAATTCCCATGTAGACTGTGCACCGCGATATTCCCAAATCTTCGAGCACTCAAAGGCCACAATCGAGCGCATATGGGAGTAGCGCCTGGCGTACCGTATCCGTGCAACATGTGCCCTTATACCAGTACCGATAAAGCTACTTTGGTAAGACACCTTAGGTCACACAACGGTGATCGACCTTACGAATGTTCCCTTTGCAATTATGCTTTCACTACGAAGGCCAACTGTGAACGACACGTTAGAAATCGTCATGGTAAACTCACCCGAGAAGACATCAAGAGCGTCTTGATATATCATCCGAACGAAGACTCAGCGAACGACAGTGTTGAGAGAACATCGCCGAGAGTGATGAAGGATGAAGTTCGAAAGAGTCTGGTGTATCCTAACGAACGGGACGACGTACTACAACAATCACAAATGCATTATTCTACGGTACCGATGGACATTAGAAGCGAGATAAGGGTCATCGAAGAAGCAAAGATGCACAATTCGCCAATTTCCGCGTTGCACAATTCACGGATAAATCCATACGAGAAAAATGACACTTATGCAAAAGCCACTGGAATACAGTCACTCGAATTGGCATCGAAACATTCGGAAGAATCAGGCGCACCACAGGATCTTATTATGGAGTCGGCCTACTCGAAGCTGGATGAAGATCTCGAGTCAAGGTCATCGGAAGGAAGCGTGTCTCTAGTCAGTAATACCAAATCCGATTCGCACCAAAGAATACAAGCTAGTCCGATGAACCTGAAGAAGTCTACAAACGCTTCGTCTGTTGAAAATTTGGGTGAAGACGGTCCACTGGACCTATCCATGGATGTGTTGGATCTCAGTAAAAAGACAAAAGAGAAGGATGAAGGTAGTTTCGCGGCATCGCACGAAAACTATGGGAAAAACTCGAAAGATTTCTATAATGCCACTAGCCAGCTTTTGCTCACGGAAGCATTGTTAAAGGCGGGTCAAGGTAGTTCACAAACGGCTTCATTGGAGACTCTCTACGCGAATGCTCATCTGATTTATCGCAATTTCGGCACATTTTCGGCTGGTGTTGGTTCAGGAATATTGCCACCATATTTGTTCAACCCGCATGTTTTTGGACAAGACTTTGCAATGAAGGAAAGACTTCAGAAAGAACTGGTAAGAGGACTACAATTAACCAGTGGAGGTAGTTTAGTGGAACCACCATTGACCAGTGGTAGCTTTGCAGCACTTTCTCAAAGTAGAGATCTCAGCTCGCAAACGGCAAGCGAACAGGCCGATTATGCAAAGTTCTTATCGTCCAAAATTGCCAATAAAGGTATTGTGGGTCGTGACAAGACTGACACTATTCCTGCATCGAATTCCGTGAAGATGGTCATCAAGAACGGAGTTCTTATGCCGAAGCAAAAGCAACGAAGGTATCGCACGGAAAGACCTTTTACTTGTGAACACTGTTCGGCTAGATTTACTCTGAGAAGCAACATGGAACGTCACATCAAACAGCAACATCCTCAACACTGGAGTCAGAGACCTCGAGGTGGACATTCGACTCGAGGCAGACCGCCTTCCAGTCACCCGACTTTACTGCAAAACCTTGGCCAACCTCCTTCCCAAGTAACCCGGTCTTACCAAAGCATTCTACCAAAAGTTGAGCAATCCGCTACTCCAGAATACAATAAGCACGCGATTTCCGATCAGGTGAAGTATGCCATTTTGGCGCAGCAATTGAAGGGTAACAAAGTCGAAGAGAACGATTCCGAAGAGGAATTGGTTATCGATGAAGATCCTAACGATCGGGATTCCCGCGATTCTCAAGAACATGGAGGACGTTCGACCAGTCTACTTAGAGGTCAATTAGAAGGAAATGACAGTAACAAAGAATTTGCAACTACGGAAAAGGTAGAACGAGGGTCAAAGGAAACCGAGGATCCTTCGAAAGACCCAGATGATTCTGAACATGAGGAGAAAGACAGCACGTCCAATGAAAACGAAGCGTCAGATGTGGAAAAACAGGCTGACGATAAACAAATGTCAGACAATGATTCGGATCAAGGTTGCAAGACACAATCTATCGGGGAAAAATCTGAGGATAAAAATACAGAAGATGGAACTACCGATCTGGCCAGTGTCTCGGAATTGCTCGATAATGCATCTCAGCAATATCAGCAATTTCAACCACAATACCTCAGCGACGAAGAAGGCCTTGTTGCGTCAACTAGTGACTGCAACAATTCCGGTAGCGACGAGAAGTCTGATTCTGTAAATTCGGCTAATTCGGAAAATACAACTttgtcgaagaagaagaaaaagaagaagaagaagaagaaaaagaagtcgGCATATTCTATGGCACCTAATAGAGTGATTTGTCCGTATTGCGAGAGACCATTCCCATGGACGTCCTCGCTAAGAAGACACATTTTAACTCACACGGGTCAAAAACCATATCAGTGTGTTCACtgttctcttctcttcactACAAAGTCCAATTGCGATCGCCATCTGCTCCGGAAGCACAAAACAAACCCAAATAAAATTCGCAGAGTAAGAAACTCCGCCTCACCGGACTCTCAAATCGTGATAAGTAACAACAACACGTTTTCTATGAGAAACGTTCCCGAGAGGCCATACAAGTGCAACCAATGCCCGAGTTCTACCTTTTCTACGTTGGGCAATCTGAAGAAACATCGCTCAACGAAACATGCTCGCAAGGACAAATCAAGACCCGACAGTCCGTCGAGTGAACCACAGAACAGTTCACAAGAATGTAACAAACAGAATGAACAAAGTGATTACGACAGTCAATCTTCGAGCACCTCAGAAAACTTAGAGAATCCATCGACAATGGAACCAGTTAAaccaaattcaaattcatcgCCATCGGCTAATGATACGCCACGATCACGAAGACCGTCACCCAGGTCATCACCAGGACCAAGCGACTTACCTTTCAAGTGTCATTTGTGCGACAGTGGATTTGCCGAACGACAGGATTGTCTCGAACACATAAAAATCAATCACAAACGATCTTACGAAATGCTTGTTGCGAAAGGAGCCCTTGACATGGACATAGACGGAACCGAGGATCAACAACCCCCGCCACAGCATCATCCAAGCGACGGTGAAGAAAAACGCGGTCGATTCCCGGACTACAGTAATCGAAAGgtggTCTGCGCTTTCTGCATGAGACGCTTCTGGTCAGCTGAAGATCTCCGACGACACATGAGGACGCACACAGGAGAACGTCCGTTCTCATGTGATATTTGCTGTCGACGGTTTACTCTCAAGCACAGTATGTTGCGTCACCGCAAAAAGCACGAGTCCATTGACAGTACAATGTACGTCGGTACCAGCGGCGACGAAGACAATGCTCCCACTCAACCACCTACCATCACACCACGAACACAACAACAACCACATCAACCTCCTGTTTTCGTAACTGGCAATACAGGCAGTCCACGTATTCAAGATCGCATCTCTTTACCAACGGTTGCGCCAGTCGCAACTGGAGACGCTGCTCCCAGTAGCTTAATGAGATTCAATCCATACGAGAAGCTCACTACGCTAACTGGAAAATTGTCGCATATGTCACAAAATTCGGTAAATTTAGAAACGAGCGAGAGCGCTGACAATGATCTTATCTCTAATCTCCTCGGTATTAGAGACAAGAGTTTTATCGATCGAGTGCTTCAAGCCTCCGCAGATGATGCTGCGAAGCTTCTAGGCGTAAATCGTAATCACGAATAA
Protein Sequence: MKPDGLRIARLILCILVSVTPKSEPDQEHDNQMQADAASPPSSVELSEGAHPCPACPTVLPSSRDLTSHLRNHNSPRSGTDCSAEEDYCCGVCNKVLSSASSLDRHALVHSGERPFKCKHCDMAFTTNGNMNRHLRSAHRDVSPSQQSCTDSEGSSDSEKPSKRRHIEEEYNNNEIAKRNSPDDLIQQSPRSTNSLIGQGKRKCPDGFFSDGEGQRKHKILLNNSRTEGKPRTDDNQNVYNCPVCGRQDFATSALLEAHLERSHPEFPAKCDTCNLSFKSHRVLNLHRFMIHFAEHSIGGTARNLRNSVVGFNDLTFVDFSSDKFPAIARAVCEQSLHRPASGEVTKFQCTKCLRAFPCRSALEAHETDCGIINSQSRNTDDNQSKRDDFFAGLDLQNKAALVEAKEGKDLADIQSIISVTSGPILQNFPRSDASTPENSIRLNPSVGSSGSSGTFSSEFHEEEAQDAFAAEFRKMKLKGEFPCRLCTAIFPNLRALKGHNRAHMGVAPGVPYPCNMCPYTSTDKATLVRHLRSHNGDRPYECSLCNYAFTTKANCERHVRNRHGKLTREDIKSVLIYHPNEDSANDSVERTSPRVMKDEVRKSLVYPNERDDVLQQSQMHYSTVPMDIRSEIRVIEEAKMHNSPISALHNSRINPYEKNDTYAKATGIQSLELASKHSEESGAPQDLIMESAYSKLDEDLESRSSEGSVSLVSNTKSDSHQRIQASPMNLKKSTNASSVENLGEDGPLDLSMDVLDLSKKTKEKDEGSFAASHENYGKNSKDFYNATSQLLLTEALLKAGQGSSQTASLETLYANAHLIYRNFGTFSAGVGSGILPPYLFNPHVFGQDFAMKERLQKELVRGLQLTSGGSLVEPPLTSGSFAALSQSRDLSSQTASEQADYAKFLSSKIANKGIVGRDKTDTIPASNSVKMVIKNGVLMPKQKQRRYRTERPFTCEHCSARFTLRSNMERHIKQQHPQHWSQRPRGGHSTRGRPPSSHPTLLQNLGQPPSQVTRSYQSILPKVEQSATPEYNKHAISDQVKYAILAQQLKGNKVEENDSEEELVIDEDPNDRDSRDSQEHGGRSTSLLRGQLEGNDSNKEFATTEKVERGSKETEDPSKDPDDSEHEEKDSTSNENEASDVEKQADDKQMSDNDSDQGCKTQSIGEKSEDKNTEDGTTDLASVSELLDNASQQYQQFQPQYLSDEEGLVASTSDCNNSGSDEKSDSVNSANSENTTLSKKKKKKKKKKKKKSAYSMAPNRVICPYCERPFPWTSSLRRHILTHTGQKPYQCVHCSLLFTTKSNCDRHLLRKHKTNPNKIRRVRNSASPDSQIVISNNNTFSMRNVPERPYKCNQCPSSTFSTLGNLKKHRSTKHARKDKSRPDSPSSEPQNSSQECNKQNEQSDYDSQSSSTSENLENPSTMEPVKPNSNSSPSANDTPRSRRPSPRSSPGPSDLPFKCHLCDSGFAERQDCLEHIKINHKRSYEMLVAKGALDMDIDGTEDQQPPPQHHPSDGEEKRGRFPDYSNRKVVCAFCMRRFWSAEDLRRHMRTHTGERPFSCDICCRRFTLKHSMLRHRKKHESIDSTMYVGTSGDEDNAPTQPPTITPRTQQQPHQPPVFVTGNTGSPRIQDRISLPTVAPVATGDAAPSSLMRFNPYEKLTTLTGKLSHMSQNSVNLETSESADNDLISNLLGIRDKSFIDRVLQASADDAAKLLGVNRNHE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -