Tatt003065.1
Basic Information
- Insect
- Trypoxylon attenuatum
- Gene Symbol
- ZFX
- Assembly
- GCA_963989405.1
- Location
- OZ022488.1:32705390-32709698[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.2 1.1e+02 3.7 0.1 3 23 15 35 14 35 0.94 2 15 2.9 2.7e+02 2.5 3.4 1 23 899 922 899 922 0.80 3 15 0.00025 0.024 15.2 0.6 2 23 1005 1027 1004 1027 0.96 4 15 0.0069 0.65 10.7 1.9 2 23 1040 1061 1039 1061 0.96 5 15 0.00014 0.013 16.0 4.3 2 23 1064 1085 1063 1085 0.97 6 15 0.0016 0.15 12.7 0.3 1 23 1091 1113 1091 1113 0.97 7 15 2.3e-05 0.0021 18.5 4.5 2 23 1120 1141 1119 1142 0.95 8 15 0.048 4.5 8.1 2.8 5 23 1155 1173 1152 1173 0.96 9 15 2e-05 0.0019 18.7 1.5 3 23 1180 1201 1179 1201 0.97 10 15 0.0093 0.88 10.3 0.3 2 23 1217 1237 1216 1237 0.97 11 15 3.4e-05 0.0031 18.0 0.7 1 20 1243 1262 1243 1265 0.92 12 15 7.7e-05 0.0072 16.8 2.7 1 23 1273 1295 1273 1295 0.99 13 15 0.0022 0.2 12.3 3.2 1 23 1301 1323 1301 1323 0.97 14 15 3.9e-06 0.00037 20.9 3.9 1 23 1329 1351 1329 1351 0.99 15 15 0.0013 0.13 12.9 6.3 1 23 1357 1379 1357 1380 0.96
Sequence Information
- Coding Sequence
- ATGGATATCAGCAACCTAAACTCTGGTGGGGGTGCAGTGGCTTGTCCGGTATGCACCCTCTACCTTAGAGAGGGTATCAGTTTGCAGAGACACTTGGATACCCATCCGAAGGAGCAGGTTATAGAGGCTCTTATCAAAGCTAGTTCCAGTTCAGTACAAACGCAACAAGCTCAATTGCCATCCACACCATTGAGTTCATCGTCGGTACAGCCTCTGCAAAATAGTCCACAGATCGCACCGAATACAACGCCTCTTTCGCCGCAGTCACCATATCCTATTGGACCCATTTTTGAGTGTCCGACAATTGGTACGGTCATGTCACCTCAGTTCACCTCGTTTAGTTATCAACAGTTTGTAAATAATGGGACTGTCATGATACCGCAATACGCGATGGCTCCGCAAGCCAATCAAATGATGCAGATGCTTTATAATCCTTATGGTTTATATCAGCAGCAACAGATTCCCACTATGCAAATGATTTCTCCAGTGACCACCGTATCGGGCACTACTAGGCATAGAACGACTTTGACTATAGCTAATGAGACAACTGGGCGTCCTACTATCACCGTACCTATCAGTAACACTGAACCAAAGCAAATACTGCCTGAAATTTTGCCAGAAATGGAACACGAACCTGAACATCTTCTATCCGACATGAACGCTGGAACTTCTCCTTCCTTGAACGAAACTGGTACAGTGCAATCTCATGACAATGAATCTAATATCGTTCAAGTGGAACCACAAGAACATAGCACACACAATACCGATGTTCAGGAACAATGTACAATACAATCAGCTTATAATCCTATTCCAACGTCTCTGGCCATTACCTGTAGTATTCGTAGTGAAACCACGGACAAAGTTGAAAGTGTGCTACCGGATATAGATGACTTACAATCGCCAACGGAAAAGACTGTGAAATCTCCACAGTGTAAAGAACCTGAAACAGAGAATTACGTGACTGTGTACAAAGACTGTCCCAACAAAGTTGTTTCCAATGAAGTTTCttccaatttaaataaaaGCAACGTCGAAGAAGAAATGATAACGGTCGAAGATAAGCCTTCCCACGAAGAAGAACGTACAGAGTCCAATGTCACCACGCCCAAAGGTCCATCAGCTCCCGTCAGAGAGAAGGAATCTGCTCAGCCTGAAGTTGAACAACTCGAGCGTCTTCTTATAACAATTATGGAATCGGAATTCAGAAGCACTCTACCCCCTAACGACGTTAATGCCAATCAGAATAAAACTCCTGACACGGAGCTACAAGAGAAATTtgagatagaaaaagaagacgtAATCCCTCAAATACCGGTAGCTAGTATTGTAGACAATGACGAGCATGCATGTGATATTTCTACTAGCGAAGAGAAAGTTCCCCAAGAAGTTGAATCGAGCAAAAGCAATGGTGAAGAAAAAGTTGacgattatatttataaatacaagCACAGTTTATCGGCGCCTGCTTCACCGTTTATTCAAAGACGTGCATTCCGAAGTTATTCGGTTCGTTCGGAATTAGGCTCAACGGAGAATCTTTATCCGTTAGGATTTGATGCGAGCATGTTCCACGatgaagaagacgacgaagatGAAGAGAACGATGACGATGAGATTGACGATACGGATGATCTCAATGACAACAACGACAGCGAGAAACATGATATGGACGACAATCTTGACGAagcggatatggaaatagaaGATATTCCTAGTCCACACACGCCTCTTATCAAATGCGGAGACAATACTGAGTACATAAGATCTCACACACCCCTTTCTGTAAGTAGTGGAGTATCGGTACTTAGAGTCAGAAAGGATCTTAGCAAGCCCTGCTCACCTGCCTCAGTGCAATCGTTCTGCCACGTAGACACTAATGGCATAAACGAAAATGAGGGTAGCAATAACGGCCACGATGAATCTTTGGAAAAGAAGCCAATCGACGATGTCGACAAAGAATCACACGATGTTGTTTACGATAATATTACCGTGAATTGTACTGAGATTGACAAAAAGCCAGAGTCTCATACAGCGTATCATCAATCAGTTATTATAGAGCATACCACCGTACACAGCCAGCAATCGACTTCATTGCATGATCCGTATTCGGCGGTGACGACGGGAAAAACCGAAAGTATCTCGAATTTTACTAATTCGATTGAAGTAACGAGTAATACTGATATAAAAGGATCACCTTATACGAAACCAGTTGTACAGAAGCAATCACTGGAAGTACTCAGTCTAAACGAGGACGCTCATGCGGGGCCAATGAATGTTTTTGAATTCGACGGCCTGCAAATCTTAGTTCCTAGTACATTCATTAATGAATCCTCGCAAAAAGCAGTTAGTGCAACCAGTCAACAGTCAATGGCTAGCAGCGAAGGGGGTGTCGGTATCGATGAAGAAGTGAAGAGCGTTAGTATGCGAGCGGATGAAACCATGCCACCTAGAGGAGAATTATCCGAGCAAGAAAGCAACGGTTGTACAGAACAGTCAGCTTGGCAGCTCTACATGGGTCAAGAATCTTCACGGATGTCGACATCCTATGACTTAATGGCACGCGAAAGCTGGGAAGAATCCGAAGGATCGGACAATGAAATTAGCAATCCATTGCTCGACAGTAGATCACTAGCGACACATTTCACGTCGAGCTTGTTTTTAGACAGAGATAGAAAAACCCCTACAAAAAGGACATTCAAATGTTATCATTGTCCAGAAGTGTTCGATTGTCCTAAAGAACGTAGAGTTCACAGTACTACCGCGCACAAAGAAGCCGGACCGAGCAGCAGCCGTGAGCCAGTTGATCAAGGCGAAGTGAAAGACATCAAGTTACTCGATGGTCGGGTAAACATATTCGAAGATATTTTTGTACCCGGTTTACACGTTCAGCAAATTTACCATCATCAACAACCCCTGTTGCATCAATTGCAACCGGCTCAATCTTCAGAATTGACGAAACTAGAATCTGAtccgaaaattgaaaatttagcCATCCAGTCGAATTCCGAAATCACCTGTGGAATGTGTAATCAACGATTCAGTGGGGAGAAGTTACTTCAACAGCATCAGAGAAGAGTCCACGTAACCGAGCCACCGAAACGTATGCGTGAAATCTGTAAATGTCAAATCTGCAACGAAGAGTTCTCCTCGATTTTACTATTCAACACACACTTAAAGATACATCCGTTAGAGTGTGGCCAATGTGGGAAATATTTTCACAGAAAGCAAAATTTCAAGCTCCACATGAAACGACATTTGGGAATCAAACCATTTCCCTGTACGGTTTGTGACAAAGCATTCTTGACAAAGCAGAAGCTCGACGAGCACATGAACGGCCATACTGGTAATGCACCGGTCAAATGCAATCTCTGTAACGAGACTTTTCGGAGATATTCAAATTTAACTCAACACAAGAACAGACATCACCTTAACATAAAGAGAAAGCTCAAGGATTATGTATGCCATTGTGGCGAAGTGTTTCACACGAAGAAGAAACTAGCTTGGCACAAGGAAACTCACGACGATAAGCCAAAGGCTTGTACTTACTGTAACGAGAGGTTCATTCACATGGCCAGTTTAACCAGACACATGCGTCGCGCCCACAATCGGAGATTCGTTCCTGATGCtcagagagaaaacgagaacgTCGAGTGTCCCATATGTAAATGCATTTATTTACGATCTTCTTTGGCCGTGCATATGCGCGTACACAATGGTGAACGACCCTACGAATGTCAGATTTGCTCGAAGGCGTTCAGTACTAAGTGGAATTTGCAATTACACAAGTGGACGCATGCTGCTCGTAGTACCAAACCTTTTAAGTGTAACCAGTGTAGCGCGGCGTTTTATAGGCACAGTGATTATACCGCTCACATGAATTCCCATAGGAATGTGCGTCCTTATACTTGCAATTATTGCGGAGCCCAATTCATAAGAAAGTATAATTGCCTGAGGCATGTAAAGGAACACGAAGAGAACAAAGCATACACGTGTGACGTTTGCAACAAAACTTTCCACAGATCGTACTATCTGAAAGAACATTTACGTGTTCACTCAGGCGCTAGGCCGTATACGTGTCATATATGCGGCAAATCCAGCGGCACCAAATCAAATCACAATAAGCATGTTAGGATTCATCATGCGCGGGAACCCGTGAACACTGAGAATTAG
- Protein Sequence
- MDISNLNSGGGAVACPVCTLYLREGISLQRHLDTHPKEQVIEALIKASSSSVQTQQAQLPSTPLSSSSVQPLQNSPQIAPNTTPLSPQSPYPIGPIFECPTIGTVMSPQFTSFSYQQFVNNGTVMIPQYAMAPQANQMMQMLYNPYGLYQQQQIPTMQMISPVTTVSGTTRHRTTLTIANETTGRPTITVPISNTEPKQILPEILPEMEHEPEHLLSDMNAGTSPSLNETGTVQSHDNESNIVQVEPQEHSTHNTDVQEQCTIQSAYNPIPTSLAITCSIRSETTDKVESVLPDIDDLQSPTEKTVKSPQCKEPETENYVTVYKDCPNKVVSNEVSSNLNKSNVEEEMITVEDKPSHEEERTESNVTTPKGPSAPVREKESAQPEVEQLERLLITIMESEFRSTLPPNDVNANQNKTPDTELQEKFEIEKEDVIPQIPVASIVDNDEHACDISTSEEKVPQEVESSKSNGEEKVDDYIYKYKHSLSAPASPFIQRRAFRSYSVRSELGSTENLYPLGFDASMFHDEEDDEDEENDDDEIDDTDDLNDNNDSEKHDMDDNLDEADMEIEDIPSPHTPLIKCGDNTEYIRSHTPLSVSSGVSVLRVRKDLSKPCSPASVQSFCHVDTNGINENEGSNNGHDESLEKKPIDDVDKESHDVVYDNITVNCTEIDKKPESHTAYHQSVIIEHTTVHSQQSTSLHDPYSAVTTGKTESISNFTNSIEVTSNTDIKGSPYTKPVVQKQSLEVLSLNEDAHAGPMNVFEFDGLQILVPSTFINESSQKAVSATSQQSMASSEGGVGIDEEVKSVSMRADETMPPRGELSEQESNGCTEQSAWQLYMGQESSRMSTSYDLMARESWEESEGSDNEISNPLLDSRSLATHFTSSLFLDRDRKTPTKRTFKCYHCPEVFDCPKERRVHSTTAHKEAGPSSSREPVDQGEVKDIKLLDGRVNIFEDIFVPGLHVQQIYHHQQPLLHQLQPAQSSELTKLESDPKIENLAIQSNSEITCGMCNQRFSGEKLLQQHQRRVHVTEPPKRMREICKCQICNEEFSSILLFNTHLKIHPLECGQCGKYFHRKQNFKLHMKRHLGIKPFPCTVCDKAFLTKQKLDEHMNGHTGNAPVKCNLCNETFRRYSNLTQHKNRHHLNIKRKLKDYVCHCGEVFHTKKKLAWHKETHDDKPKACTYCNERFIHMASLTRHMRRAHNRRFVPDAQRENENVECPICKCIYLRSSLAVHMRVHNGERPYECQICSKAFSTKWNLQLHKWTHAARSTKPFKCNQCSAAFYRHSDYTAHMNSHRNVRPYTCNYCGAQFIRKYNCLRHVKEHEENKAYTCDVCNKTFHRSYYLKEHLRVHSGARPYTCHICGKSSGTKSNHNKHVRIHHAREPVNTEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -