Tatt013912.1
Basic Information
- Insect
- Trypoxylon attenuatum
- Gene Symbol
- -
- Assembly
- GCA_963989405.1
- Location
- OZ022493.1:5451349-5454452[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.015 1.4 9.6 0.2 3 21 8 27 6 28 0.85 2 13 0.88 82 4.1 0.4 1 12 295 306 295 315 0.89 3 13 0.027 2.6 8.8 1.7 1 20 439 458 439 460 0.94 4 13 7e-05 0.0066 17.0 0.4 2 23 465 486 465 486 0.97 5 13 0.0011 0.1 13.2 4.9 1 23 497 519 497 519 0.97 6 13 0.0036 0.33 11.6 0.1 1 23 538 559 538 559 0.93 7 13 0.00065 0.061 13.9 0.1 2 23 565 586 564 586 0.95 8 13 4.7e-05 0.0044 17.5 4.8 1 23 615 637 615 637 0.99 9 13 2e-06 0.00019 21.8 3.7 1 23 643 665 643 665 0.96 10 13 0.00024 0.022 15.3 4.1 1 23 671 693 671 693 0.97 11 13 1.4e-06 0.00013 22.3 0.8 1 23 699 721 699 721 0.98 12 13 9e-05 0.0085 16.6 0.2 1 23 725 747 725 747 0.99 13 13 0.00039 0.036 14.6 0.2 1 23 755 777 755 777 0.97
Sequence Information
- Coding Sequence
- ATGGGATCGTTGAGTCTCGTTTGTCCCATGTGCTGTGGGGAAAGCTTCAACAATCCTCAGTCCTTAAAGTATCATCTGCTGAGCATGACGGACAATCTGTATTGTCCTAGCTGTTCGCAACGTTCAGATTCTGTATTGGCGCTTATTCAACATTTGGACCGTTGTGGACAGAACGCAGACTCTGAGATACACTCCGAATTGAAAGATCAATTTCTCGAAACGGTCAAGGCAAAGGCACAACAGTTAATGGACAGCGAGCAAGAATCGGTGCTAGATCCAGAGGAAAAAATGCTTCCAGTGGCCGATCAACAATTGGGTCTGGAACCAGAGTCAGAGGTAGAATTGGAAGCGGAAATGGAAACCGAACTAGAAGAAGAGGTACCACAGGATCCTGACCAGGACCAAAGAACGGAGACCGAAGTTTTGATGGACACTAATGTGGAAGAAATAGAACAGAGCTTCCTCGCGACTGTAAACGATAATGGAATCATGATAGTTGGAGAGCCACGAACGATAGAAGTCGACGAACATGGGGAAATTAAGGTCGTCGAAAAAATGGAAACTGACGTGGAGTCAGCATCGCGTATTTGTGAGGAATCTCTAGACTTCAAGGTAGTGGAAAAAATGACGGAAGTGAGGAATAACGCAAAGGGAGACGAGTTAGCGGAAGAGGAACTCGTTGCGCTGACTAGTACGGACATGAACGAGAAAAGCAACGGAAAAAGCATTATCGCTATATTGCCAGATGGTTCCGAATTACTCGATGGCAGTCCCGAAACTCTTCTAAACGTGGCTGACCTTGGCAATGATGTAGCCGAGTTGGACGAGGAGGGTTTGCTTCAAGTAAAGCAGGAATTGTGCGAGGTAGACTCGGAGGCGGTTTACAGTTGTACGAGTTGCGACATGAGTTTCAATTCCGTCGTCGAGCACATAAAACAATATCACGACGGACAAGAGGTACTGCTTGAAATCGCCGATCAATTGGACGATTTACCGGTGACACCGAAATCGGGTCAAGCACCGGCGCCTACAACGGCAGCAGGAATAGCGGGGAATGCGGTACCGGTCGAAATGGAAACTGTAGCCAACACACGGCAGCGGCAGACCATGAACACTCTTCGAACGGAGGAATGCGTAGATAGCGAAGGTAGGCTCTATACAAGGAAGGTGGTGCAAATCGAAAGGTTTTGGGATAGGTCACCCTCGCAATCAACGTTCCAAGCGAGCAAAGCGCCAATGatcgagaaatttttctccaatGTAGAAGGATTAAAGGTTCGCGAGAAGAGGATAGCAACGTCGCCAATGCGAATGTACAGGTGTAATCAGTGCCTTCAACAGTTTTCCAAGCTAGGAAACTTTCGTGTTCACGCGTGTCTTAACGGAAACAATCGGTGTGACAACTGCGACCAAACGTTTGCTACTTCAAAAGCGTTACAGTTACACGCAAAGGTCCATGAGGGGGAACCGGATCCAAATCAAAAAAGTTTTATCTGCGAGACCTGTGGCACCGAGTTCTGTTCTCACAAGAGTTTACGTTTACATTCGCGAATGCACGCGCCAGTTCGAGCGCGGCATGTCGACGCACCCGAAGGCACGGCAAATGCAACTTTTACTTGTCCCGAATGCGGTAAAACGCTGTCCGAGTCGTACAAAGAAGCGCACATGGCACTGCACTCTGGAGATTCAGTCACATGTACGGTGTGCAACAGGAAATTCGACTCGGCGGACAGCTTGGCAATGCACGCGGCGGTGCACACCGAGTTGGCTCAGTCCCATTCACCAACGGCTCCCCTGACGGACGTAGCGGCTGACGTAGCCTCGGGTGAACCTCAAAAGCCGTACCAATGCCAACACTGTGGTCGCCGATTTACCAGGCCACACGAGAAAGTTAAGCACGAGCGCATCCACACGGGGGAAAAGCCTCACGCCTGCGAGgtATGTGGCAAAACTTTCCGTGTTTCGTACTGTTTAACGCTACATATGAGGACTCATACCGGAGTGCGACCTTACGCGTGTCAACATTGCGGCAAGAGATTCAAGGCCTCCTCAGTGTATAATCACCATCTGCTTACCCATGGGGAGGAGCGCGCGTACACGTGTCCTTATTGTCCAAAAACTTTCAAGACTAGAGTGCAGTTAGCCGGGCACAAAAACAGTCACACCAAGCCGTTCCGATGCACCGAGTGTTCGCGGCCGTTTGCCTCTCTCTACGCTGCGCGTGCTCACATACAGACTCACAAGAAGGACAACAATCTAAAGTTCAGTTGTTACATTTGCGGTGCATCGTACGGTAGAGCATTTGCATTGAAAGATCACCTGAAGCAACACGGCCAGGATGCGGCatcggctgctgctgctgctgcagctgCGGCCGCCGCTGCCGCTCCCGAACCAGCGCGCGAAGAAGAGGTGCAGGAAGCCGAAGAATTTCTTCTTGCCGAAGTCGAGGAAGAAGTCGAAGATGACGAAATGGTGGTTCCTTCGCCGTTACCCGTGACTGCGCACCATTCGGACGTTGAGGATACCGAATGA
- Protein Sequence
- MGSLSLVCPMCCGESFNNPQSLKYHLLSMTDNLYCPSCSQRSDSVLALIQHLDRCGQNADSEIHSELKDQFLETVKAKAQQLMDSEQESVLDPEEKMLPVADQQLGLEPESEVELEAEMETELEEEVPQDPDQDQRTETEVLMDTNVEEIEQSFLATVNDNGIMIVGEPRTIEVDEHGEIKVVEKMETDVESASRICEESLDFKVVEKMTEVRNNAKGDELAEEELVALTSTDMNEKSNGKSIIAILPDGSELLDGSPETLLNVADLGNDVAELDEEGLLQVKQELCEVDSEAVYSCTSCDMSFNSVVEHIKQYHDGQEVLLEIADQLDDLPVTPKSGQAPAPTTAAGIAGNAVPVEMETVANTRQRQTMNTLRTEECVDSEGRLYTRKVVQIERFWDRSPSQSTFQASKAPMIEKFFSNVEGLKVREKRIATSPMRMYRCNQCLQQFSKLGNFRVHACLNGNNRCDNCDQTFATSKALQLHAKVHEGEPDPNQKSFICETCGTEFCSHKSLRLHSRMHAPVRARHVDAPEGTANATFTCPECGKTLSESYKEAHMALHSGDSVTCTVCNRKFDSADSLAMHAAVHTELAQSHSPTAPLTDVAADVASGEPQKPYQCQHCGRRFTRPHEKVKHERIHTGEKPHACEVCGKTFRVSYCLTLHMRTHTGVRPYACQHCGKRFKASSVYNHHLLTHGEERAYTCPYCPKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAARAHIQTHKKDNNLKFSCYICGASYGRAFALKDHLKQHGQDAASAAAAAAAAAAAAAPEPAREEEVQEAEEFLLAEVEEEVEDDEMVVPSPLPVTAHHSDVEDTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -