Basic Information

Insect: Trypoxylon attenuatum
Gene Symbol: -
Assembly: GCA_963989405.1
Location: OZ022488.1:30141875-30144778[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.023 2.2 9.1 4.5 2 23 285 306 284 306 0.94

2 11 0.00011 0.01 16.4 0.2 1 23 314 337 314 337 0.96

3 11 0.00031 0.029 15.0 2.5 1 23 376 398 376 398 0.98

4 11 1.1e-05 0.00099 19.6 2.5 2 23 450 471 449 471 0.97

5 11 7.3e-05 0.0068 16.9 0.7 1 23 476 499 476 499 0.94

6 11 1.3e-06 0.00013 22.4 1.2 1 23 536 558 536 558 0.98

7 11 7.3e-07 6.8e-05 23.2 0.9 1 23 568 590 568 590 0.96

8 11 9.4e-06 0.00088 19.7 0.9 1 23 596 618 596 618 0.99

9 11 4.4e-06 0.00041 20.8 0.3 1 23 624 646 624 646 0.98

10 11 7.9e-05 0.0074 16.8 4.6 1 23 652 674 652 674 0.98

11 11 0.00032 0.03 14.9 0.4 1 21 680 700 680 701 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.023	2.2	9.1	4.5	2	23	285	306	284	306	0.94
2	11	0.00011	0.01	16.4	0.2	1	23	314	337	314	337	0.96
3	11	0.00031	0.029	15.0	2.5	1	23	376	398	376	398	0.98
4	11	1.1e-05	0.00099	19.6	2.5	2	23	450	471	449	471	0.97
5	11	7.3e-05	0.0068	16.9	0.7	1	23	476	499	476	499	0.94
6	11	1.3e-06	0.00013	22.4	1.2	1	23	536	558	536	558	0.98
7	11	7.3e-07	6.8e-05	23.2	0.9	1	23	568	590	568	590	0.96
8	11	9.4e-06	0.00088	19.7	0.9	1	23	596	618	596	618	0.99
9	11	4.4e-06	0.00041	20.8	0.3	1	23	624	646	624	646	0.98
10	11	7.9e-05	0.0074	16.8	4.6	1	23	652	674	652	674	0.98
11	11	0.00032	0.03	14.9	0.4	1	21	680	700	680	701	0.94

Sequence Information

Coding Sequence: ATGGAAATTAACCAGAATGGGCCGTTTATAGATGATCCAGAAAACACTTATGACAATCAGTGCCGACTGTGCTTAAGAAAGACCACCCAAATCTGTCAATTGTTTCGTAATGGAGGTACAACGCTAACAAAACTAATGGCCATTGCCTCGATACAGGTCGAAGAAGGGGATGGCCTGCCACACATAATTTGTATACCGTGTAGTCAACTGTTAGACACATTTTATGATTTTAAATGCCAAATAGAAGATTCGGATCAGAAACTCCGTCAGATTCTTAAGCTGAATAGCATGAAAGCGGATCAGTCGTGCAGTACAAATGTTGCGAGTGAAAGCGTACCAATGGTAATACCTAATGTGGACGATGCTCAAATAAATAATGTCAACAGCCAgaacacggaagaagaagataactTTTGTAAACTGGAATCGGCCGTTGCTCCTTACACAGAGGAGAATGGTGAATTTTGTACAATAACTTTAAAGCATTCTATTGTCTACTGTAATAAGGAGAACGAAGTAGCGAACAAAGATACGACAAAGTTACAGGAGAATCATGTAGATATTAATAGCATTAAGTCGGACAGTTTAAACAAGTACTCGTCTTTCCaacaaatagaaaataatttaacgaaggaagaaaatttATCTTTGAACAATGGCAATAGCAATAATGTGGAAAAAGAAGCTTGGCCATTGCAAAATATTTGCGAAATCAAATTAGAGAGCCACGAACAACGAGTTATAGGTCCCGAACCCCACTGGGTGGAGTGTTCGAGAACGGAGGGCCTCGAAGAAGAGCCAAGAATAAttgacgaagaagaaaagcctTTGATATGGAGAACCTCTCGTCTGAAATGTATGTCTTGTATTAAATCTTTCCGCACAAAACACGCGTTGCATAGGCATCTAATGGCGCACAAGCGTAAAACAAAGCTACGTTTCGTATGTTACGTATGCGAAAAACAGTTTTCGAACGTTGCGAGCCTCAAGACACATATAGCAATTCGCCATGATTCTCAGCAGAAGAAAGTATTCCAGAAGAATATCAAAGAAAAGATGATGAAGAAAAGGTTACGGAAGACCTACGAAGCAGCCACGCAGGAtgatgagaagaagaagcttaAATTTGTATGCAAAGTATGTTCGAAACAATTTACATATCAAAAGTCATTTCTAACCCACGCAAGCACACACCCAGAGTACAAATCGATCACGGTAAAACACGATCActgcgaggaaaaaagaaaactgcgAAATACTTCCGAGAGGAAAAGtcaagaggagaaagaagagaaagctACGAAGAAAGATGAGGACGATGACGTAGAATTCCCAATGGAAAGCTTACAATGCACCCAATGCAGGAAACTCTTCGCGACTAAGCGAAACCTAAAGCGACATATATCTACTCATAGCGGTCTTAAATACAATTGTACGACGTGTGGCAAGGGTTTTTCTCGAGTAGACAAACTGAGGGATCACGAAGAATCAAAACATAAACTAGAGGTATTCGATAATTCGGACACCGAAGAAAAGGACGAGACGAATACCGAAACCAGCGAAGATACGGCTGAAAAAAGTCGAAAAgAAAAACATAATCGGCCACATAAGTGTACGATGTGTCCAAAGTCATTCGCACAGGCACGATCACTGGCAAATCATATGGAACGTCACAAGCGAGCAAAAGAAACGCAAAAGCGATTCTTGTGTGAGGTGTGCAGTAAGTGTTTCGCACAAAGTGGATCCCTAGTCGCCCATATGCGGACTCACACCGGTGTCAGACCATACGTTTGCACTGTGTGCAGTAGAGCCTTTACCAAAGGCACTTACTTACAGTTACATATGCGAACTCATAGTGGTGAAAAGCCTTATATATGTCAGTACTGCAGCAAAGCGTTCGCAAGAGCGAATACATTGGCAAGGCACATAACGATGCATACGGGAGAAGCAAAATATCATTGTCAAATCTGTACCAAGTCCTTCAGAAGATTAACTTCCTTAAATGAGCATACCTATACACATACGGGACAACGACCTTACGCGTGCAAAATTTGCTCAAAACGCTATAACAATGCGGGCTCATTGTACGCTCACAGAAAAAAATGCATAGCACAACATCTCGCTAGCACTATAACTCCTACCGACGGTATCTTACAGCAAGGAAACGGACAAATGCCACAGGTTCTAATGTACTCGCAGAAAAGGATAGTAGACGATACAGTAGGAGTTACCCAAACCGCACCTGGCTCACAATTTCCGATTACAAATGTGCAATCGCAAAAGAGCCTTACTGCAAGCTTAATGGAACCGTTCTCGATGGACGACACGAATGGTTATACGATAAATTCAAAGCCATTCAAAGCTGCTTACTATCCGATTTATCCGAATATGTAA
Protein Sequence: MEINQNGPFIDDPENTYDNQCRLCLRKTTQICQLFRNGGTTLTKLMAIASIQVEEGDGLPHIICIPCSQLLDTFYDFKCQIEDSDQKLRQILKLNSMKADQSCSTNVASESVPMVIPNVDDAQINNVNSQNTEEEDNFCKLESAVAPYTEENGEFCTITLKHSIVYCNKENEVANKDTTKLQENHVDINSIKSDSLNKYSSFQQIENNLTKEENLSLNNGNSNNVEKEAWPLQNICEIKLESHEQRVIGPEPHWVECSRTEGLEEEPRIIDEEEKPLIWRTSRLKCMSCIKSFRTKHALHRHLMAHKRKTKLRFVCYVCEKQFSNVASLKTHIAIRHDSQQKKVFQKNIKEKMMKKRLRKTYEAATQDDEKKKLKFVCKVCSKQFTYQKSFLTHASTHPEYKSITVKHDHCEEKRKLRNTSERKSQEEKEEKATKKDEDDDVEFPMESLQCTQCRKLFATKRNLKRHISTHSGLKYNCTTCGKGFSRVDKLRDHEESKHKLEVFDNSDTEEKDETNTETSEDTAEKSRKEKHNRPHKCTMCPKSFAQARSLANHMERHKRAKETQKRFLCEVCSKCFAQSGSLVAHMRTHTGVRPYVCTVCSRAFTKGTYLQLHMRTHSGEKPYICQYCSKAFARANTLARHITMHTGEAKYHCQICTKSFRRLTSLNEHTYTHTGQRPYACKICSKRYNNAGSLYAHRKKCIAQHLASTITPTDGILQQGNGQMPQVLMYSQKRIVDDTVGVTQTAPGSQFPITNVQSQKSLTASLMEPFSMDDTNGYTINSKPFKAAYYPIYPNM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -