Tatt002753.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Trypoxylon attenuatum
Gene Symbol
-
Assembly
GCA_963989405.1
Location
OZ022488.1:28242963-28245373[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 1.4 1.3e+02 3.4 0.5 3 19 162 178 160 180 0.87
2 16 0.00044 0.041 14.5 1.2 1 23 217 239 217 239 0.97
3 16 0.15 14 6.5 2.7 2 23 281 303 280 303 0.93
4 16 0.005 0.47 11.2 0.2 1 23 309 331 309 331 0.97
5 16 2.5e-06 0.00023 21.5 3.4 1 23 337 359 337 359 0.96
6 16 0.00039 0.037 14.6 3.6 1 23 368 390 368 390 0.97
7 16 0.00013 0.013 16.1 1.7 1 23 396 418 396 418 0.97
8 16 8.1e-06 0.00076 19.9 0.7 1 23 423 445 423 445 0.97
9 16 0.00016 0.015 15.9 0.7 1 23 452 474 452 474 0.98
10 16 0.0056 0.53 11.0 0.2 2 23 494 515 493 515 0.96
11 16 0.00029 0.027 15.0 0.8 2 23 523 545 522 545 0.96
12 16 0.0092 0.86 10.3 0.2 1 23 551 573 551 573 0.95
13 16 0.00012 0.011 16.2 4.5 1 23 579 601 579 601 0.98
14 16 3.6e-07 3.3e-05 24.2 3.2 1 23 607 629 607 629 0.98
15 16 2.1e-06 0.0002 21.8 0.3 1 23 635 657 635 657 0.98
16 16 0.051 4.8 8.0 0.8 2 23 663 684 662 684 0.95

Sequence Information

Coding Sequence
ATGAGTGATCCAATGTCACAGAAAGTATGTCTGGATTGCTCTGATAAATTGGAAACCACGCATGCACTAATCGCCAGTTGTTTAAAGGCTGACACGAAACTAAGAAAGTGTTTAAATATAGAGCCACCGCCGGTTTACGATTGTAACTACAATGAACTAGTCCATGCTTGTTCCTTGGAGGTAGTCGATCTTGATGGAATCTGCATGGACGAACCTACGCAATTTGCCCATCAAATTTTCCCAGAAGGAAGCTCAAAAAAGATTGGAAACAGCCATGAATTACCCAAATTGCCCGTTAGCTTGGACGATATAGGAAACAATCCTACCTCGCCTGCTAATTTTGAGAATAGAACCGGATGCATATTTCATCCTGCGTTTCAGGCATTAACCGAATGCTATAGTAAACTCAACAATGAGAAACATAACTCTGCGATGAAAGATACGAATGTAgtagaaaaaatgaaagaaaatagtGCAATTTTCTGTCCACTTTGTGAAGGTACATTTACGACACAGGAAATATTTGAACATCATAAATTTTTATGCGACGAGGAAAGTTCAATGATTATCCGGAAGGACAATAGTGTTCGCATTAATTGCACGTTCGGAGAACTCGTGGCTAACGGAAATGACGAAAAACTCACTGAATACAAAtgcgaaaattgcaaaaaagaaTTTGACAACGAGAAGCTCTTGTCCGACCATAAACTATTACATTGCAAGTACTTTCCACGGACACACTCGCAACAGCCTGCAGAGTTTGGAACAATTGAAGAAAAGCTGAATTTGTCCAAAGCGGAGAATAATATTGATGACAATGTGCAGGTGGAACTCAGCAAAAGGTGTGGCCACTGCGAAGCAATTCGCTCTaacaaaaaagaattattgaaaCACATTATAGAGTGTCACAATGGTCAGCTATTGTTCAAGTGTTTCGCCTGTGAGAAAACCTATGAGAAATGGTCGGGCTTAGACGTTCACGAAGCAACGCATCGACTTGACAAACCTTACCTCTGCGATCTCTGCGGTAAGAGTTTTAAGCACTCGAACAATTTACGAGGCCACAAGCGAACTCATTTGGACGAGTCCAAAAAGAAACGTCATGTTTGCGAAATTTGCAGTAGCCCCTTTCGATCTAGATTCCATTTACGCGAACACATGAACCAGCACGATGACAATAAACCATACTCCTGCGAGCAGTGTGGAAAAGCATTTCACAAAAGAATACAATTACGGCAACACGGATTGTCGCACGGTTCGAATAAACATGTTTGTCGAATATGCGGTGCAAGTTTTAATCGCAGGGGTAACATGATTGCCCATTTGAAGCGTCACAATGATGGATACGGTACCTATACGTGCAGTGTCTGCGCGCAGAGATTCGAAACTATGAGCGAATTGAAACTCCACAGGAAAGTTCATACGAGGGAGGATATTGTAAATAGCGTTAAAAGGAAATGCGTCGGTAAAATGATATGGGAATGCAAACTCTGTGATCGTGTTTTTCCAAAGCGAGCAATCTTGCTGTACCACGAGCGAACACATACGGGAGATCGAATGACGGTAGAGTGCGAGGAATGCGGGAAAAAATTGTCGAGTCAAAAATCCTTATCGTATCATAAAAAATCTATGCATTCGATCGAGAGGCAACACATGTGTCAGTATTGTGGCGAGGCATTCGTAGCTAAGGAAGCCCGATTAATCCACGAGCGAATACACACTGGCGAGCGTCCTTACATTTGTAAGATCTGTAATATGCGTTACAAATGCTCGAGCAATCTGAACCAACACATGAAAACGCACTCCAGCGTTAAACCCCATAAATGTAGCTTCTGCGGGAAAAGTTTCGCGCGCAAGGATACCCTGACAGTCCACGAACGAACTCATACTGGTGTAAAACCATTCCCTTGCGAAATCTGCGGCCGGCCGTTCTCGCAAAAGAACGATATGCTTAAGCACGCTAAGACTCACGATGTCAAGGCGATCCGTTGCGAGCGATGCAATGACGTTTTTACCaaaaagaaagatattttCAAGCACCTTGCTTTACACGAGCAAGATCCTCTTGAATCGCAGAACGTTCAGTTGCAAAACCACGCGTACAATGTTGACCCAGCCAATTCCTCTCAAGTGAAataa
Protein Sequence
MSDPMSQKVCLDCSDKLETTHALIASCLKADTKLRKCLNIEPPPVYDCNYNELVHACSLEVVDLDGICMDEPTQFAHQIFPEGSSKKIGNSHELPKLPVSLDDIGNNPTSPANFENRTGCIFHPAFQALTECYSKLNNEKHNSAMKDTNVVEKMKENSAIFCPLCEGTFTTQEIFEHHKFLCDEESSMIIRKDNSVRINCTFGELVANGNDEKLTEYKCENCKKEFDNEKLLSDHKLLHCKYFPRTHSQQPAEFGTIEEKLNLSKAENNIDDNVQVELSKRCGHCEAIRSNKKELLKHIIECHNGQLLFKCFACEKTYEKWSGLDVHEATHRLDKPYLCDLCGKSFKHSNNLRGHKRTHLDESKKKRHVCEICSSPFRSRFHLREHMNQHDDNKPYSCEQCGKAFHKRIQLRQHGLSHGSNKHVCRICGASFNRRGNMIAHLKRHNDGYGTYTCSVCAQRFETMSELKLHRKVHTREDIVNSVKRKCVGKMIWECKLCDRVFPKRAILLYHERTHTGDRMTVECEECGKKLSSQKSLSYHKKSMHSIERQHMCQYCGEAFVAKEARLIHERIHTGERPYICKICNMRYKCSSNLNQHMKTHSSVKPHKCSFCGKSFARKDTLTVHERTHTGVKPFPCEICGRPFSQKNDMLKHAKTHDVKAIRCERCNDVFTKKKDIFKHLALHEQDPLESQNVQLQNHAYNVDPANSSQVK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-