Tatt014492.1
Basic Information
- Insect
- Trypoxylon attenuatum
- Gene Symbol
- Snai1
- Assembly
- GCA_963989405.1
- Location
- OZ022493.1:12752427-12755472[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 8.2 7.7e+02 1.0 0.1 3 16 65 78 63 80 0.73 2 13 0.011 1.1 10.0 0.1 1 23 243 265 243 265 0.94 3 13 1.3e-05 0.0012 19.3 1.2 1 23 273 295 273 295 0.98 4 13 5.2e-06 0.00049 20.5 0.2 2 23 303 324 302 324 0.97 5 13 5.3e-06 0.00049 20.5 0.7 1 23 330 352 330 352 0.99 6 13 3e-05 0.0028 18.2 2.2 1 23 359 381 359 381 0.98 7 13 3.8e-06 0.00036 20.9 0.6 1 23 387 409 387 409 0.96 8 13 1.1e-05 0.00099 19.6 0.2 1 23 415 437 415 437 0.98 9 13 5.4e-07 5.1e-05 23.6 1.2 1 23 443 466 443 466 0.96 10 13 2.8e-06 0.00027 21.4 0.5 1 23 472 495 472 495 0.96 11 13 1e-06 9.6e-05 22.8 2.0 1 23 501 523 501 523 0.99 12 13 7e-05 0.0066 17.0 0.4 1 23 529 551 529 551 0.94 13 13 0.00022 0.021 15.4 0.1 1 23 557 581 557 581 0.94
Sequence Information
- Coding Sequence
- ATGACAGCCGAATCGGAGAAGGATAGCACTCATTGTTTGATTTGCAATAGTAAAGTGGGTGTTTCCACTAGAAACAGCATACGTATTTTCAGCGAGACTTCTCTTACTTTATCAGAGAAGCCACTCGTCGATACAATTTGTACTGTCTTGGAGACAGACTTGAACGAGGAAAATGTACATTCTCTTGTTATATGCAAGAAgtgttataaattatttaacgagATCGATGAATTGGAAACAAGACTCGTGGAAGTAAAGTTAGagttatttaataattacaaaaaGACTATGAAGAAAATGAATGACATGATCCAGAATGAAGACGAATACAATGACCACGATTATATAGAGAATGTAGAAGACCAAGTTTTAGAAGGCGAAGCAACTTACATCGAAGAAGCTAATCCAGCGAACGTAAATCCTGATCAGATAAGCGAAGAACACGAAATGGAactggaagaagagaagttTGATGAGAGCGACCGTTCTATAAGTCAAGAAGCAAAGTCCAACATTGGAACTGTTTTGGAAGGTACTCCGgctgaagaaaaaagaagaacaaagCGACAGAAGGTGTCTGTGAAAGTCGAGCCTCCTCAGGAACAAATTGTATCCAGAGATGGCTCTTTATATACTTGTTTATTATGTATAAATGACGAAGATAGAGCAACGGGTGATGCAAAATCCATTATAGCGCACACAAAAAGTGTACACGAAACACGTTTGTACATTTGTGATATATGCGGCGATGATTTTAGGAAAAGAAACGAACTTTCGCTGCATCTCGATGATCACGTTGCGAAAGAAGAAGGTGACTTCCAATGTGAGATATGTAATCGAATATTTAGTAATCTACGTCTATTTAGAATTCACAAACGCATACATTACCCGCAAGTAAAGTCGTGGCCTTGTGAGACATGTGGTAAAAGATATAGCTCGCGGAACTTATTAGAGGAGCACATCAATACACATACCGGTGTTCGTCCGTACGTATGCGAAAGCTGTGGTAAGGACTTCGCCTCGAAATACACTTATAAGGCACACGTGAAAACACACGAAGTACGTCCACGACCATTCGAATGTTCGCAATGTAACAAAACGTTTCTAAGCCAGCAAAATTTGAACCAGCATGAGAGAACTCACAATGGTATAAAGGAATATGTTTGTCACCAATGCGGTAAGGCTTTTGGTTCGCCGCATAATTTGGAAGTTCATAACATAGTACATACTGGGTATAAACCGTACATATGTCGAATGTGCGGCAAGGCATTTGCCCGAAAAGCGGAGATCAGAGATCACGAAAGAACGCACACTGGCGAAAAGCCATATCAGTGTGAATTCTGTGGTGCTACTTTTagTCAAAGATCGAATCTACAGTCTCATAAACGTGCTACGCACTACAATGATAAAAGGTACAAGTGTGACGATTGTGGTAAGGGatttaaaagaagaagactatTGGATTATCATATCAAAGCAGCACACACTGGCGAAAGACCATACAAATGCGAAATATGCACAGCTACGTTTGTTTATCCGGAGCATTTCAAAAAACACATGCGCATACACACTGGAGAAAAACCTTACCTTTGCGAGgTATGTGGGAAAGCATTTAACAGTAGGGATAATAGAAATGCACATCGATTTATTCACAGTGATAAGAAACCCTATGAATGTTTGGTATGTGGAATGGGTTTCATGAGGAAACCCTTATTATATGCTCATATGCAGACACAGGGTCATTTAAACGATACAATTGTCGTTAATCAACCGCGATTGACTACCGAAGAGGACCAGGTTATCACTCTTCCCGATGGAAACGTTGAAGTTTTAATGGATGGAACGGAAAACGAACAGTTGGAAGGAACCGAGCTTTACGTGACGGAACTAAAAGATCACGTTATAATTGAGCAATCAAACGAGGATCAAATATACAATGAAGAAGACGTCCTAAATATACCAGCGGAGGAGGCTGTTCCAGATGAAGAAGTAGCGCATTTGGTTGACGAACAGATTAATTTCACCGAAAGTGAGGTCCTGGAATGCAAAACTGAAGAAGAGGAACAAGTGGAAGAAGTTTACAATTATCACGAAGGCGAAGATGGAGAAACAATAGTTGTACCAGCCACTACAGAGTACAAAGAACTAGTAGATGACAAGAATGCAGTTCGATTAGTACAGATACGATTTCCAACCGCGGTCGGAGGTGACGGTCGCAGTTGGCTAAGTTTAGTACCAAATACATGA
- Protein Sequence
- MTAESEKDSTHCLICNSKVGVSTRNSIRIFSETSLTLSEKPLVDTICTVLETDLNEENVHSLVICKKCYKLFNEIDELETRLVEVKLELFNNYKKTMKKMNDMIQNEDEYNDHDYIENVEDQVLEGEATYIEEANPANVNPDQISEEHEMELEEEKFDESDRSISQEAKSNIGTVLEGTPAEEKRRTKRQKVSVKVEPPQEQIVSRDGSLYTCLLCINDEDRATGDAKSIIAHTKSVHETRLYICDICGDDFRKRNELSLHLDDHVAKEEGDFQCEICNRIFSNLRLFRIHKRIHYPQVKSWPCETCGKRYSSRNLLEEHINTHTGVRPYVCESCGKDFASKYTYKAHVKTHEVRPRPFECSQCNKTFLSQQNLNQHERTHNGIKEYVCHQCGKAFGSPHNLEVHNIVHTGYKPYICRMCGKAFARKAEIRDHERTHTGEKPYQCEFCGATFSQRSNLQSHKRATHYNDKRYKCDDCGKGFKRRRLLDYHIKAAHTGERPYKCEICTATFVYPEHFKKHMRIHTGEKPYLCEVCGKAFNSRDNRNAHRFIHSDKKPYECLVCGMGFMRKPLLYAHMQTQGHLNDTIVVNQPRLTTEEDQVITLPDGNVEVLMDGTENEQLEGTELYVTELKDHVIIEQSNEDQIYNEEDVLNIPAEEAVPDEEVAHLVDEQINFTESEVLECKTEEEEQVEEVYNYHEGEDGETIVVPATTEYKELVDDKNAVRLVQIRFPTAVGGDGRSWLSLVPNT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00734079;
- 90% Identity
- -
- 80% Identity
- -