Basic Information

Insect: Trypoxylon attenuatum
Gene Symbol: -
Assembly: GCA_963989405.1
Location: OZ022488.1:34919480-34922378[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0005 0.047 14.3 0.1 1 21 57 77 57 78 0.94

2 13 4.7e-06 0.00044 20.7 0.5 1 23 163 186 163 186 0.95

3 13 1.3e-05 0.0012 19.3 2.4 2 23 193 215 192 215 0.95

4 13 0.00023 0.022 15.3 4.6 1 20 221 240 221 242 0.95

5 13 1.4e-08 1.3e-06 28.6 2.8 1 23 254 276 254 276 0.99

6 13 3.8e-06 0.00036 21.0 0.3 2 23 286 307 285 307 0.97

7 13 0.00033 0.031 14.8 0.5 2 23 314 335 313 335 0.97

8 13 1.7e-05 0.0016 18.9 3.5 1 23 341 363 341 363 0.98

9 13 5.6e-06 0.00053 20.4 1.3 1 23 369 391 369 391 0.95

10 13 0.0001 0.0098 16.4 1.9 1 23 397 420 397 420 0.94

11 13 5.7e-05 0.0053 17.3 1.3 1 23 426 448 426 448 0.97

12 13 3.5e-08 3.3e-06 27.4 1.2 1 23 454 476 454 476 0.99

13 13 0.00025 0.024 15.2 1.8 3 23 484 505 483 505 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0005	0.047	14.3	0.1	1	21	57	77	57	78	0.94
2	13	4.7e-06	0.00044	20.7	0.5	1	23	163	186	163	186	0.95
3	13	1.3e-05	0.0012	19.3	2.4	2	23	193	215	192	215	0.95
4	13	0.00023	0.022	15.3	4.6	1	20	221	240	221	242	0.95
5	13	1.4e-08	1.3e-06	28.6	2.8	1	23	254	276	254	276	0.99
6	13	3.8e-06	0.00036	21.0	0.3	2	23	286	307	285	307	0.97
7	13	0.00033	0.031	14.8	0.5	2	23	314	335	313	335	0.97
8	13	1.7e-05	0.0016	18.9	3.5	1	23	341	363	341	363	0.98
9	13	5.6e-06	0.00053	20.4	1.3	1	23	369	391	369	391	0.95
10	13	0.0001	0.0098	16.4	1.9	1	23	397	420	397	420	0.94
11	13	5.7e-05	0.0053	17.3	1.3	1	23	426	448	426	448	0.97
12	13	3.5e-08	3.3e-06	27.4	1.2	1	23	454	476	454	476	0.99
13	13	0.00025	0.024	15.2	1.8	3	23	484	505	483	505	0.94

Sequence Information

Coding Sequence: ATGGATGCCAAAGAAGGAGACTCAGCATTGGCCACTACAATTATTGAAGATAATTGTTTTAGTACCACCACAATTCAGCCTGATCGTATTATTGTACCTGTTACCACAGAATCGGACAGTTTAAAAGTCTTTGTTCAAAGTGGTCAAATTATTGAATTCATATCAGACTATGAGTGTGTAACTTGTCACCGTGTTTTTACTTCAGAAGCTttgTTGATAGAGCATTTAGATACCTGCAGGGAAGATGACGATTCCCGTGATATGTTGGATTTGGATAAATTTAAGAATTATGAGTCGGAAGCAtgcgacgaagaagaagaagaagaagagaacgtCGATGACCCAAGTCTTACCGATGATTCTCCCTCTAAAGATGGGCAGGACGCACaaaaaaacaataatgttAAGCCTGTAATTCTACCTGTACCTGATACTCAATGTCACTGCTGCGCAGAAGACTTGAGCACGGCGCATAGCGGTGGGAAATTTGAGTGTTCGGAATGCGATCTGTCTTTCAAGAAAAGTGCCTCATTGAGGCGACACAAAATAGTGATCCATTGGAGATGTAGTTCGTGCGCGTGTAAACAGTGTGGAGAAACATTTCGCGATAAGAAAGCTTTGAGTAAACACCAATATACTATTCACGCAGACAAAAAAATTTTCAGATGCGAAACCTGTGATACATATTTCTCGCGACGTTATCATCTAAATCGGCATAAAGAACATTCTGGTTGCAAATCTAGCAGTATTCGCACAACATATTATTGTCAGATCTGTCAAAAAACTTTTACGCGTAAAGATAATTTGCGCGAGCATTTGCGTACACACGAGGGAATGCCACAGCGGCAAAAGAAACCGTGTAAATATTGTCCGAAAGAGTTTACCACTAGCCAACAATTGATAATTCATGAACGAATTCATACAGGAGAACGACCGGTCCAATGCGATTTGTGTCCAAAAACATTTCTATCAGCACTCTCGTTGAAAAAGCATCGTCGTGTTCACACTGGAGAAAAGCCATTTTCATGTACATTCTgtcaaagaaaattttctGCTCGCGAGACATTGAATCGTCATCAGCGTACTCATACTGGTGAGAAACCTCACGTTTGTCAATACTGTGGAAAAGGATTCATTCAAGCAGCTCAATTACGAGCACACATATTTCACCATACTGGTGAGAATGGATTTCACTGTGACGTTTGTGGCAAAGCTTTTAATCGGAGAGCTCGTTTGAACATTCATAAAAAATTCGTACACGAAGGTGCTACTCCGTTTAAATGCAAATCCTGTGATAAGAGATTTATACGCAAGGAAGATATAATGAAACACGTTCTGCTACATAGTGGCGTAAAACCGTTTAAGTGCGATAAATGCACGAAAGCATTTTCGACAAAGTCGGCGTTACAAGCACATTTAAATACGCATCGACGCGAACCACCTCAGTTCTGCGTCGAGTGCAATCGAGTATTTATACGACAAGACTGTTTAATGAGGCATGTAAAAGCAAAACACCGCGAGTTGCTGGAAGACGTGGTGGACgaagttgaaaaaaaacaTCTACACAGTCAATTGTTCAAAATTGCATCGATTGCTGCTGCAAAAGAGGAAGCTGGTAAAGCTACTGTCTTATCAACGgaacaattattaaattcgatCGCGGATCTTTTGAAGATATTGATCGATGAAGAAACACTCCAGATGTTTGGTTGGCCTACTTCACCGATTCAAGATATTCTCGAAGCAGTAATCAGAAGATGTGGTCACGAACCTGTTGCTTCTGAAAGCAACATGTTTTTCGGCGATAGATTACGAGAAAATGTGAAGCTTTTATTTAACACAGTAGTTAACGATGACGATCTTAGTAACTTATTGACTGCGAAAACAGTGGATGATGTTATTTTGCATGTACTCCAGAGgacaaattattcgaatacgAATACGTAG
Protein Sequence: MDAKEGDSALATTIIEDNCFSTTTIQPDRIIVPVTTESDSLKVFVQSGQIIEFISDYECVTCHRVFTSEALLIEHLDTCREDDDSRDMLDLDKFKNYESEACDEEEEEEENVDDPSLTDDSPSKDGQDAQKNNNVKPVILPVPDTQCHCCAEDLSTAHSGGKFECSECDLSFKKSASLRRHKIVIHWRCSSCACKQCGETFRDKKALSKHQYTIHADKKIFRCETCDTYFSRRYHLNRHKEHSGCKSSSIRTTYYCQICQKTFTRKDNLREHLRTHEGMPQRQKKPCKYCPKEFTTSQQLIIHERIHTGERPVQCDLCPKTFLSALSLKKHRRVHTGEKPFSCTFCQRKFSARETLNRHQRTHTGEKPHVCQYCGKGFIQAAQLRAHIFHHTGENGFHCDVCGKAFNRRARLNIHKKFVHEGATPFKCKSCDKRFIRKEDIMKHVLLHSGVKPFKCDKCTKAFSTKSALQAHLNTHRREPPQFCVECNRVFIRQDCLMRHVKAKHRELLEDVVDEVEKKHLHSQLFKIASIAAAKEEAGKATVLSTEQLLNSIADLLKILIDEETLQMFGWPTSPIQDILEAVIRRCGHEPVASESNMFFGDRLRENVKLLFNTVVNDDDLSNLLTAKTVDDVILHVLQRTNYSNTNT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -