Tatt009617.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Trypoxylon attenuatum
Gene Symbol
-
Assembly
GCA_963989405.1
Location
OZ022491.1:8824006-8828978[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 0.00015 0.014 16.0 4.6 2 23 347 368 346 368 0.97
2 14 3.4e-06 0.00032 21.1 1.8 2 23 475 496 474 496 0.97
3 14 9.9e-06 0.00093 19.7 1.8 1 23 502 524 502 524 0.97
4 14 7.1e-05 0.0067 17.0 0.8 1 23 530 552 530 552 0.98
5 14 9e-07 8.5e-05 22.9 1.4 1 23 567 589 567 589 0.98
6 14 6e-06 0.00056 20.3 1.2 3 23 597 617 595 617 0.98
7 14 1.1e-05 0.001 19.5 1.2 1 23 623 645 623 645 0.98
8 14 0.00073 0.069 13.8 0.2 1 23 651 673 651 673 0.99
9 14 3.2e-06 0.0003 21.2 0.3 1 23 679 702 679 702 0.94
10 14 1.7e-05 0.0016 19.0 1.3 1 23 708 730 708 730 0.98
11 14 0.00012 0.011 16.3 4.8 1 23 736 758 736 758 0.98
12 14 5.4e-06 0.00051 20.5 0.2 1 23 764 787 764 787 0.96
13 14 8e-06 0.00075 19.9 0.5 1 23 793 815 793 815 0.95
14 14 3.2e-06 0.0003 21.2 4.5 1 23 821 843 821 843 0.99

Sequence Information

Coding Sequence
ATGCGGGAAATCAATGCGCATGACGAATTGGATGCGATGTCTGGTCTCACTACCCTCATAAACATCCCGCCAAATTCGGGTGAAGAAATATCGATAGCAGAGTGCTGCTCGTTCCTTGACAAAATACTAACTCTTAAAGGCCTAGAAGTCAGAGCTAAACATTTAGATTCAATGGAACGTAGACAGAATATGAAGCCGCAGTCTCCAAAGACAATTGACAAATCTAAAGACGAATCGCACCACTGTGGGCAAATTGACATAATAGATGTACCGGTagatgaaaattgtaaatataagTACTTTTTTGTATACGAAGACCAGCTATCTAAATTTGTAGTATTAAGAGCACTACGTCGCAAAACTCCGAAGGAAGTTGCACTGAAATTAATAGACATACTAGCAATTATAGGTGCTCCTCAAGTTTTATGGAGTCGCGATGGGAGACATTTCGTGAAACAGGTAGTGcacgaaatgaaattattatggGATGGTCTTCTAATGTCCGATGGTGATATTGCGAATGAGAAACTGGAAACTAGGGACTTCAAGAAATTACTCAAAAATTGGCTTGAGAGAAATCCTAATAAGACATGGTATGAAGGCTTGAAATTTATACAAGTATTAGAGAACACAACGTTTTGTTGTTCCAACAACAACATTCCATGCAATAAACTCTTTGGCCAACCAGTACGCAATGCCTTTCAAAGATTGCCCATTCATTCGGAATTGAGGAGTGCACGTTCGGTGAAACTTAACAGTGATCCAAATTTTAAGAACGAAGATCCCATCTTTAAGCAAGAGAACACAAAGAATGATGATGGTACCGATTCGAGCTTTATAGTTACGGAACATACGTACAGTCAGTCACGAGGATCTGAAAGCGATGCAGACAGCGAAACTACAAGAACACCGCACGCCTTCAATTTCGTTAATGTAAAAAGCGAGCTGCCTATAAACGTAGAATCAGGAGACACGAATTTTGAAGATGAGCAACTAATAGAAATTGATACAAAACCCGACACGGAGATCGAGGAtttgaaatgtaaaatatgtatGAAACAATATACGAAACAAGGCCACTTGAAAAATCATATGAAAACTCATTCAGGAGAGAAAAGTCCTGGATGTAAAACACTTGAAGTTGATAATCTTCAGGAAAAACAGGTGCGACAGTCGCAGGAACAAGGTAGATTGATTATATCGAGCAGAACGAGACAAAGTAAGAATAAGTTAAGTGAAAATATCCCGGATATCGATAATTTAAATTGTCAAGATGGTTCTGCTACCGAAATCGATAATCCCGAAGCTGAGAATATTCCGATCGATAATTCTAAAGAGAGCGGAAAAGAATTGAACGCACCTGGCAAGCGGAAACTTTCCTCGGAAAATCGCACGTCGAAAAGAAACGGAGACCCATCTTTAGAATGTACATATTGTAAGCAAAAGTTTAGTTTTCCTAGTGTTTTAAAAAGGCACATGCGTTCGCATACAAACGAAAGGCCATACATTTGCGAAGTTTGCAACAAGAGTTTCAAGCAATTGGGTCATCTTAGTCAACATTCTCTCACGCACAAGGATTATCGATCGTTTCAATGTGCTTTTTGCGGAATTAAATTCGAAACTCTCGATTCGCTAAAGACGCATTCGCAAACGCACAAAGGTGAATCCGTCGCGAAAACTAAAGGAGTTGTTCGGTTGTTCGAATGTGACAATTGTAAAAAGGTATTTACGACAAAGAGTGTATTAGAAAGACATATATTTACGCACACACACGAACGGCAGTTTGGTTGTAAAGTGTGTGGGAAAAGATTCAAACAGGCAGGACACGTGAAATCTCATATGCTAGTTCACACTGGCGAACGGAGATTCGAGTGTACGGTTTGTTCGAAAAGATTTAGCCTAGcgaattcattgaaaaagcACATGTACGTTCACAATGGCGAGAAGCCATATCAATGCGACGTGTGCGGAGCGCGTTTTCTCGAGAAAAGGAATTTAAATGGTCATTTGATGACACACACGAACGAAAGACCTTTCCGCTGTAAAATTTGTGGTAAACGTTATACCTTGGCAGATACTTTGCGTCGTCATATCAGCGCGGCTCATGAAGATGGTCGAACTTATCAATGCGAAATATGTGCGAAAATGTTTAAACAGCTTGCGCACCTTTCCGTTCACAAGAAGGTGCACAACGACGAACGACCATTCCAATGTCATCTGTGCGAGAAAACTTTTAAGCATAAAAACGTATTGAAAAGTCATCTAGCGATTCACGCGAACGTAAGACCATTCGAATGCGACGTTTGCAAAGCAACTTTCGTTAGAAAGACAAATTTACAGACTCACATAGCTTCCGCTCATATGAACGAAAGACCTTATGCTTGCACAATCTGCGGAAAGCGCTTTAAGCAGATTAGTCATTTAAATGGGCACGTAGTTGTCCATAGCAATTCTATGCCATATCAATGTGACTTTTGCGATCGGCGATGCAATAGATTAGATAACTTGAAAAAACACATGCGGCTTCATACGAAAAACAAGGAGTGA
Protein Sequence
MREINAHDELDAMSGLTTLINIPPNSGEEISIAECCSFLDKILTLKGLEVRAKHLDSMERRQNMKPQSPKTIDKSKDESHHCGQIDIIDVPVDENCKYKYFFVYEDQLSKFVVLRALRRKTPKEVALKLIDILAIIGAPQVLWSRDGRHFVKQVVHEMKLLWDGLLMSDGDIANEKLETRDFKKLLKNWLERNPNKTWYEGLKFIQVLENTTFCCSNNNIPCNKLFGQPVRNAFQRLPIHSELRSARSVKLNSDPNFKNEDPIFKQENTKNDDGTDSSFIVTEHTYSQSRGSESDADSETTRTPHAFNFVNVKSELPINVESGDTNFEDEQLIEIDTKPDTEIEDLKCKICMKQYTKQGHLKNHMKTHSGEKSPGCKTLEVDNLQEKQVRQSQEQGRLIISSRTRQSKNKLSENIPDIDNLNCQDGSATEIDNPEAENIPIDNSKESGKELNAPGKRKLSSENRTSKRNGDPSLECTYCKQKFSFPSVLKRHMRSHTNERPYICEVCNKSFKQLGHLSQHSLTHKDYRSFQCAFCGIKFETLDSLKTHSQTHKGESVAKTKGVVRLFECDNCKKVFTTKSVLERHIFTHTHERQFGCKVCGKRFKQAGHVKSHMLVHTGERRFECTVCSKRFSLANSLKKHMYVHNGEKPYQCDVCGARFLEKRNLNGHLMTHTNERPFRCKICGKRYTLADTLRRHISAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCEKTFKHKNVLKSHLAIHANVRPFECDVCKATFVRKTNLQTHIASAHMNERPYACTICGKRFKQISHLNGHVVVHSNSMPYQCDFCDRRCNRLDNLKKHMRLHTKNKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-